PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751968
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 204aa    MW: 23469.6 Da    PI: 9.313
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751968genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.11.9e-0889147563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                +  +rk +NRe+ArrsR +K++ +e  +    +L +e ++L ++l     ++++  +e+
  676751968  89 RGKKRKKSNRESARRSRMKKQKHLEDVRSQLNQLNTEKRELVNQLRYVMHHCQRANMEN 147
                5579*****************************************99999999887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-784142No hitNo description
SMARTSM003382.4E-1085149IPR004827Basic-leucine zipper domain
PfamPF077169.3E-586133IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.72687133IPR004827Basic-leucine zipper domain
CDDcd147023.51E-1691141No hitNo description
SuperFamilySSF579591.29E-891140No hitNo description
PROSITE patternPS00036092107IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSSTLPVFSS EPVLTSHATA LETGFTPWDD APDLFSIFDS PACPVEVNPG LEKPNSCQTQ  60
NKSYPNLGLE DKHFNQTGLN VYIPNKDERG KKRKKSNRES ARRSRMKKQK HLEDVRSQLN  120
QLNTEKRELV NQLRYVMHHC QRANMENDRL RLEHQILHEK LLNLRQALVL RQIQQSSTCA  180
TWSCVNSTVV TVNQNPSLIR DHVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19094KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751968
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619717.12e-98PREDICTED: regulatory protein opaque-2-like
TrEMBLA0A078HJJ01e-111A0A078HJJ0_BRANA; BnaAnng05020D protein
TrEMBLA0A398AJZ81e-111A0A398AJZ8_BRACM; Uncharacterized protein
STRINGBo2g168170.19e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.17e-51basic leucine-zipper 5