PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752084
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family AP2
Protein Properties Length: 368aa    MW: 41441 Da    PI: 8.585
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752084genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99e-1797146155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  676752084  97 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 146
                78*******************......55**********************99987 PP
2AP240.85.7e-13189236152
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                s+y+GV+ +k  grW+A++  +     + k+++lg f+t+ +Aa+a+++a+ k
  676752084 189 SKYRGVTLHK-CGRWEARLGQF----LNkKYVYLGLFDTEMDAARAYDKAAIK 236
                89********.7******5553....234**********77*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-897146IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1597155IPR016177DNA-binding domain
PROSITE profilePS5103217.8298154IPR001471AP2/ERF domain
SMARTSM003801.9E-3098160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-1798154IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-17189248IPR016177DNA-binding domain
PfamPF008473.2E-8189236IPR001471AP2/ERF domain
CDDcd000185.06E-23189247No hitNo description
PROSITE profilePS5103215.778190247IPR001471AP2/ERF domain
SMARTSM003801.3E-29190253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16190247IPR001471AP2/ERF domain
PRINTSPR003677.9E-6191202IPR001471AP2/ERF domain
PRINTSPR003677.9E-6229249IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MWNLNDSPDH HEESVGDVSI SMSSSATWLL SVSPVTRNFF PGQNTEQEVR GISGPGFSSQ  60
RVVRWNPSGG SGRPENQEPE ISPPVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  120
QVYLGGFDTA HAAARAYDRA AVKFRGVDAD INFAIEDYVE DLKQMRSLTK EEFMHVIRRQ  180
STGFPRGSSK YRGVTLHKCG RWEARLGQFL NKKYVYLGLF DTEMDAARAY DKAAIKSNGK  240
DAVTNFDPKV YEEELSPEKE WNDHNLDLSL GESNSEEFGI KPEIASMRNR IRDEERLLGS  300
DLSLGIVGSN KQSDGGGKRV GMAASSGFSP HHSPMEPLLS SLNYHSNHHL GTASRERYGF  360
DKLDYFKS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752084
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593568.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_013686235.10.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ9FH951e-164TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A3P6B4W40.0A0A3P6B4W4_BRACM; Uncharacterized protein
STRINGBo7g064000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-154target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]