PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752178
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 693aa    MW: 76876.3 Da    PI: 4.9923
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752178genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.88.9e-1071765166355
       GRAS   6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
                 +c + + ++d e a++ L r++e +s+ gdp++R+a+yfteAL +rl+      ++  +p +    +++e + ++k++++++P+ kf+hltaNqaIlea
  676752178 176 HDCSRIL-DSDSEDATKSLVRIRESVSELGDPTERVAFYFTEALCNRLSA-----SND-SPPA---ASVEELILSYKTLNDACPYAKFAHLTANQAILEA 265
                5566644.568999***********************************9.....222.2222...3489****************************** PP

       GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                +e+++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++f+f + + + ++ l+ +++rv+p+E+l
  676752178 266 TEHSSKIHIVDFGIVQGIQWPALLQALATRSSGKPaRVRVSGIPAPSLGesPEPSLIATGNRLRDFAKVLDLNFDFIP-ILTPIHLLNGSSFRVDPDEVL 364
                *******************************77666**********99998999************************.799****************** PP

       GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                aVn++lql++llde+ ++ +   + L+l +sl+P vv++ e e+++n+  F++r+ +al++ysa+f+sle +l+r+s+er  vEr+l+gr+i++++  e 
  676752178 365 AVNFMLQLYKLLDETPTIVD---TALRLARSLNPMVVTLGEYEVSLNRVGFANRVKNALHFYSAVFESLEPNLGRDSQERLRVERVLFGRRISDLIGPEI 461
                ************99999999...**************************************************************************997 PP

       GRAS 303 ae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                +  +rer+e++e+Wr  +e+aGF++v+ls++a++qak ll +++ s+ y++ e++
  676752178 462 TGnHRERMEEKEQWRVFMENAGFESVKLSNYAVSQAKILLWNYNySNLYSIVESK 516
                7559****************************************9999*999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.439145514IPR005202Transcription factor GRAS
PfamPF035143.1E-104176516IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MAYMCTDTGN LMAIAQQVIK QKQQQEEQQQ QHQDHQLFGI NPLSLNPWPT PNNHPLGGGE  60
FESDEWMETL IGGGDSGPDC DTWQSNPDFV IYGPDPFAAY PNRLSVPCSQ PSDLNQVIAT  120
STSLWPPSSP LSVPPPLPSS SPPPQKTKDP QTNNDSEDGG GSPVFDLEPP LLRAIHDCSR  180
ILDSDSEDAT KSLVRIRESV SELGDPTERV AFYFTEALCN RLSASNDSPP AASVEELILS  240
YKTLNDACPY AKFAHLTANQ AILEATEHSS KIHIVDFGIV QGIQWPALLQ ALATRSSGKP  300
ARVRVSGIPA PSLGESPEPS LIATGNRLRD FAKVLDLNFD FIPILTPIHL LNGSSFRVDP  360
DEVLAVNFML QLYKLLDETP TIVDTALRLA RSLNPMVVTL GEYEVSLNRV GFANRVKNAL  420
HFYSAVFESL EPNLGRDSQE RLRVERVLFG RRISDLIGPE ITGNHRERME EKEQWRVFME  480
NAGFESVKLS NYAVSQAKIL LWNYNYSNLY SIVESKPGQT SHACSILSHS VSFSIQTPTV  540
LLVLSVECVP MMASSARPLP SIFFNRHVLE ETPESWEMIN AFKTIRPLPS ATVSFLSPPS  600
KVGRKVTRFS FATASDQQKM DKKPENPNEK TGDVMSHSFG EGYATRSDEE GFGGIYGGNQ  660
TFQKDKEVHE NHPDYDKTQG SEAKEKERNR NQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1381705233362GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752178
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441267.10.0PREDICTED: scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLE4MVR50.0E4MVR5_EUTHA; mRNA, clone: RTFL01-01-I07
TrEMBLV4KUV40.0V4KUV4_EUTSA; Uncharacterized protein
STRINGXP_006393872.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]