PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752332
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 369aa    MW: 42155.6 Da    PI: 7.7765
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752332genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-1183119339
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                ++k +rr+++NReAAr+sR+RKka++++Le+   +L 
  676752332  83 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 119
                6899**************************8655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-681144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.77283125IPR004827Basic-leucine zipper domain
PfamPF001702.1E-883114IPR004827Basic-leucine zipper domain
CDDcd147085.68E-2285136No hitNo description
SuperFamilySSF579592.63E-785120No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-787113No hitNo description
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
PfamPF141446.8E-30171246IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNSTSTHFVP PRRVGIYEPL HQFGMWGETF KSNIGNGGNM NTPSHIIIPD NQKLDNNLSE  60
DTSHGTAGTP HMFDQEASTS RHPDKIQRRL AQNREAARKS RLRKKAYVQQ LETSRLKLIQ  120
LEQELDRARQ QGFYVGNGID TNSLGFSETM NPGIAAFEME YGHWIEEQNR QICELRTVLH  180
GHVSDVELRS LVENTMKHYF ELFRMKSSAA KADVFFVMSG MWRTSAERFF LWIGGFRPSD  240
LLKVLLPHFD VMTDQQVLDV CNLRQSCQQA EDALSQGMEK LQHTLAECVA RGGLGEGNYV  300
PQVNSAMERL EALVSFVNQA DHLRHETLQQ MHRILTTRQA ARGLLALGEY FQRLRALSSS  360
WATRHREPT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5320570.0FJ532057.1 Brassica rapa subsp. pekinensis TGA2 protein (TGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018515521.10.0PREDICTED: transcription factor TGA1 isoform X1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A078F2R70.0A0A078F2R7_BRANA; BnaA06g24140D protein
TrEMBLA0A3P5YWD40.0A0A3P5YWD4_BRACM; Uncharacterized protein
TrEMBLE6Y8B70.0E6Y8B7_BRARP; TGA2 protein
STRINGBra024366.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]