PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752358
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 268aa    MW: 30294.2 Da    PI: 9.5295
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752358genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.93.2e-191564251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ++ ++s   +++  R+++i+ KA  LS+LC++ v+vi+++++g+l+++++
  676752358 15 SSTSNSLTATSLRDRLKTIFRKACQLSILCQVAVCVIYYGPNGELKTWPK 64
               5667788899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.31E-122492IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.5782466IPR002100Transcription factor, MADS-box
PfamPF003193.4E-102962IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MMSSSSSSSS SSSSSSTSNS LTATSLRDRL KTIFRKACQL SILCQVAVCV IYYGPNGELK  60
TWPKEREIVK DMASRYNAAT KRKNSLNLNQ VLELKKVDDK KDLKKKKKKM KTKRESENVK  120
YPDWYPQQQQ RLCGFDQKIT NGNFQHPCVS NTQDHQALLS GQESGVKNHL MQQQELYGSH  180
QNMCMMNNIT NSNVLRHPFL TNTVPEEFCS GLQKNPDGDM VGRTGGSQDF PNLCSAYDES  240
RLIQTSSRPS LHQPLPNNYL LPDNSRCL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130508.14e-64PREDICTED: agamous-like MADS-box protein AGL75
RefseqXP_022565274.14e-64agamous-like MADS-box protein AGL75
TrEMBLA0A078H8Y61e-80A0A078H8Y6_BRANA; BnaC02g43730D protein
STRINGBra031864.1-P2e-63(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11250.11e-35AGAMOUS-like 52