PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752488
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 434aa    MW: 47861.7 Da    PI: 4.4648
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752488genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.22e-4661341129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                l+pGfrFhPtd elv +yLk+kv gkkl + ++i+e+diyk+eP dLp k  +k+++ +w+fF++r+ kyatg r+nrat+ gyWk+tgk+++vl+ +g 
  676752488   6 LAPGFRFHPTDVELVRYYLKRKVMGKKLLV-DAIPELDIYKFEPPDLPdKsFIKSGDLKWHFFCPREMKYATGVRANRATECGYWKTTGKERAVLC-NGD 103
                579************************999.89**************96446777888**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                l g  ktLv++ g++p+ge+tdWvmheyrle
  676752488 104 LAGKIKTLVYHFGKSPRGERTDWVMHEYRLE 134
                *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-563156IPR003441NAC domain
PROSITE profilePS5100551.8436156IPR003441NAC domain
PfamPF023651.4E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGKTQLAPGF RFHPTDVELV RYYLKRKVMG KKLLVDAIPE LDIYKFEPPD LPDKSFIKSG  60
DLKWHFFCPR EMKYATGVRA NRATECGYWK TTGKERAVLC NGDLAGKIKT LVYHFGKSPR  120
GERTDWVMHE YRLEDKALTQ KNIPQDTYVL CVLFKKDGPG PRNGAQYGAP FKEEDWSEDE  180
DLTAVPAINN PPTLHGTNGE TSLVVAPSHD PVKDCFGGVI SESCVSDFLP ATGTTSELPH  240
LNDAASTPVS AAPVLDSSCT ASLAQTLDAP KNDDDIYAML DLFVDEDEYL RFCEPNNNEV  300
RHDPNVSASL IRIGEEVIFD EMPDFRNMHN TSMPRTPSYD LIENSELFLE LQDLTAPLVP  360
PQIGNVSDSY LTAPLAPPPI GNVSDSYLTA PSAPPQIGNV SDSYLNYQGH FDFSAAANDD  420
PYGFAAAMGP GPDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-41615615168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752488
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611566.10.0PREDICTED: NAC domain-containing protein 82
RefseqXP_013611567.10.0PREDICTED: NAC domain-containing protein 82
SwissprotQ9FY820.0NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A3P6E4B00.0A0A3P6E4B0_BRAOL; Uncharacterized protein
STRINGBo9g174090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.40.0NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]