PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752858
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 251aa    MW: 28407.9 Da    PI: 6.7129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752858genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-172673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEde+lv  +k+ G g+W++ +++ g+ R++k+c++rw +yl
        676752858 26 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 73
                     89******************************99************97 PP
2Myb_DNA-binding49.31.1e-1580124248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g  T +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
        676752858  80 GGITSDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 124
                      56699****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-221776IPR009057Homeodomain-like
PROSITE profilePS5129416.5032173IPR017930Myb domain
SuperFamilySSF466893.27E-2922120IPR009057Homeodomain-like
SMARTSM007172.0E-132575IPR001005SANT/Myb domain
PfamPF002497.2E-152673IPR001005SANT/Myb domain
CDDcd001672.14E-112873No hitNo description
PROSITE profilePS5129423.96974128IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2477128IPR009057Homeodomain-like
SMARTSM007171.1E-1478126IPR001005SANT/Myb domain
PfamPF002493.9E-1481124IPR001005SANT/Myb domain
CDDcd001671.15E-1183124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MTSSDGKKQV TKKMMTPCCM KMGMKRGPWT VEEDEILVSF IKKEGEGRWR SLPKRAGLLR  60
CGKSCRLRWM NYLRPTVKRG GITSDEEDLI LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW  120
NTHLRKKLLR EGIDPQTHKP LDINHTHKPG EDVSGGQNLL EPNSSSHTDD TTVSSGNEAS  180
KIGISIFGDE DNEDFGFCYD DKFSSFLNSL INDDPFDSNI PISQPFQTHD CTDEIVGTSS  240
SLGHDQRPED I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27241285108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013642609.11e-163transcription repressor MYB5
SwissprotQ388501e-141MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A398AUG21e-162A0A398AUG2_BRACM; Uncharacterized protein
STRINGBra039395.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-122myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]