PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753182
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 121aa    MW: 14033.9 Da    PI: 6.5113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753182genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.86.1e-119104399
                EE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                k l++ dv  +g+l lpk+ +e++      +  +++++++ ++d +   W v+l     +++y ++ GW++  +a gLke+D++ ++  + +++++ +++
  676753182   9 KMLSNRDVADQGWLHLPKSKIENIlkkigiM-MPRNGIQVEVQDNDKSYW-VNL--HYADNGYHIRHGWNDIRDARGLKENDVINLY--W-KDTKFIFSM 101
                7899*****************8889999853.356888999999665555.677..57777899***********************..5.445559999 PP

                E-S CS
         B3  97 frk 99 
                +r+
  676753182 102 CRS 104
                986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-114110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-15697IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-87105IPR003340B3 DNA binding domain
CDDcd100172.11E-99103No hitNo description
PfamPF023621.6E-89104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MDPDMMIAKM LSNRDVADQG WLHLPKSKIE NILKKIGIMM PRNGIQVEVQ DNDKSYWVNL  60
HYADNGYHIR HGWNDIRDAR GLKENDVINL YWKDTKFIFS MCRSSDAEKA DEGESSLSSK  120
C
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753182
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489546.11e-48PREDICTED: B3 domain-containing protein At1g08985-like
SwissprotQ8GWU12e-36Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLA0A0D3BE614e-45A0A0D3BE61_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B1204e-45A0A3P6B120_BRAOL; Uncharacterized protein
STRINGBo3g092070.17e-46(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.19e-39B3 family protein