PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753202
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 347aa    MW: 39626.9 Da    PI: 5.9603
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753202genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.8e-50101521129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                lppGfrFhP+deelv++yL++k+++k            +          + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat sgyWk
  676753202  10 LPPGFRFHPSDEELVCHYLCNKIRAKAdhgdvedD---DadealqgatDLVEIDLHICEPWQLPGVAKLNAKEWYFFSFRDRKYATGYRTNRATVSGYWK 106
                79**********************99966655441...1556666764699*************87788999**************************** PP

        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                atgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  676753202 107 ATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                **********967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-578170IPR003441NAC domain
PROSITE profilePS5100553.91310170IPR003441NAC domain
PfamPF023651.1E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKADHGD VEDDDADEAL QGATDLVEID  60
LHICEPWQLP GVAKLNAKEW YFFSFRDRKY ATGYRTNRAT VSGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDSSHDNNN  180
NNDHQTQKFE VNDAPDLNYT PNYNTQLQPL LSSPPSTTID PPHHHDQWEQ LMKPSRTTDH  240
PYPHHSQHQT VAYGWEQMMI GSMSSSSSHG PDHESLLNLL YADNNNSVNI TDNHYDQNYK  300
ILLSTDITSL DHDKTCMGSS SDGGMVSDLH MECGGLSFET ENLLAFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-451017017165NO APICAL MERISTEM PROTEIN
1ut4_B8e-451017017165NO APICAL MERISTEM PROTEIN
1ut7_A8e-451017017165NO APICAL MERISTEM PROTEIN
1ut7_B8e-451017017165NO APICAL MERISTEM PROTEIN
3swm_A9e-451017020168NAC domain-containing protein 19
3swm_B9e-451017020168NAC domain-containing protein 19
3swm_C9e-451017020168NAC domain-containing protein 19
3swm_D9e-451017020168NAC domain-containing protein 19
3swp_A9e-451017020168NAC domain-containing protein 19
3swp_B9e-451017020168NAC domain-containing protein 19
3swp_C9e-451017020168NAC domain-containing protein 19
3swp_D9e-451017020168NAC domain-containing protein 19
4dul_A8e-451017017165NAC domain-containing protein 19
4dul_B8e-451017017165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753202
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382730.0KF738273.1 Brassica napus NAC transcription factor 74-1 (NAC74-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303021.10.0NAC domain-containing protein 92-like
TrEMBLA0A078HIU30.0A0A078HIU3_BRANA; BnaC01g09890D protein
STRINGBo1g017380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-174NAC domain containing protein 74