PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676753340

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 501aa MW: 55379.1 Da PI: 7.0909

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676753340	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.1	5.9e-35	47	195	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..............t 78 lp+G++F+Ptd+el+ e+L++kv k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ 676753340 47 LPAGVKFDPTDQELI-EHLEAKVLVKDIKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdnnmhgsgsS 144 799**********.99**9995543233444334666646******.555666799**************8799999999888776 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l 676753340 145 GETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195 6888********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-38	43	214	IPR003441	NAC domain
PROSITE profile	PS51005	32.848	47	214	IPR003441	NAC domain
Pfam	PF02365	1.7E-15	48	195	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MNKTNPAGSV TGSDIIDAKI EEHQLCGSKK CPSCGHKLEG KPDWVGLPAG VKFDPTDQEL 60 IEHLEAKVLV KDIKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QTECDNNMHG SGSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN 180 RKPEKTNWVM HQYHLGTHEE EKEGELVVSK IFYQTQPRQC NWSSSTSSLN AISGGGGEAN 240 SGGGGGEYHM RRDSGTTSGG SCSSSREIMN VNPPNRSDEV GGVGGGVMAV AAAAVAAGLP 300 SYAMDQLSFV PFMKSFDEVA RRETLQTGQA TCEDVMAEQH RHRHHRHQAS PSSTSHHVAH 360 EHHHHQHHHQ QQQRHHAFNI SQPTHPISTI ISPSTSLHHA PINILDDNPY HVHRIMLSNE 420 NYQTQQQQHQ EGDEEHNDGK IGGRSASGLE ELIMGCTSST THHDVKDGSS SMGNQQEAEW 480 LKYSTTFWPA PDSSDNQDHH G

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MNKTNPAGSV TGSDIIDAKI EEHQLCGSKK CPSCGHKLEG KPDWVGLPAG VKFDPTDQEL  60
IEHLEAKVLV KDIKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDNNMHG SGSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN  180
RKPEKTNWVM HQYHLGTHEE EKEGELVVSK IFYQTQPRQC NWSSSTSSLN AISGGGGEAN  240
SGGGGGEYHM RRDSGTTSGG SCSSSREIMN VNPPNRSDEV GGVGGGVMAV AAAAVAAGLP  300
SYAMDQLSFV PFMKSFDEVA RRETLQTGQA TCEDVMAEQH RHRHHRHQAS PSSTSHHVAH  360
EHHHHQHHHQ QQQRHHAFNI SQPTHPISTI ISPSTSLHHA PINILDDNPY HVHRIMLSNE  420
NYQTQQQQHQ EGDEEHNDGK IGGRSASGLE ELIMGCTSST THHDVKDGSS SMGNQQEAEW  480
LKYSTTFWPA PDSSDNQDHH G

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676753340

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161574	0.0	AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137841.1	0.0	PREDICTED: uncharacterized protein LOC103861883 isoform X2
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	M4E5U8	0.0	M4E5U8_BRARP; Uncharacterized protein
STRING	Bra024152.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6635	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	0.0	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]