PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753760
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18748.9 Da    PI: 9.7105
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753760genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.91.7e-151150342
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
               i+++s r vtf kR+ g+lKK +EL +LC+ +++ ii+s 
  676753760 11 ISDNSTRRVTFRKRKDGLLKKLHELTILCGLRALAIIYSD 50
               8999**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.19E-20184IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.222150IPR002100Transcription factor, MADS-box
CDDcd002667.76E-21285No hitNo description
PRINTSPR004041.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRRKVTHQL ISDNSTRRVT FRKRKDGLLK KLHELTILCG LRALAIIYSD YKEGPEVWPN  60
RKEVRILLKK LSALPVEKQT KYMMDQKDLM NRMIQDGEKK LEKEQIHCRT MELGIAAASR  120
ELTDPDCTED LIKAGDVVDK RLKIIRERIE AVESGAAFVE NE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLISDNSTRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753760
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416183.11e-91agamous-like MADS-box protein AGL80
TrEMBLA0A087HQF07e-93A0A087HQF0_ARAAL; Uncharacterized protein
STRINGA0A087HQF01e-93(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.24e-86AGAMOUS-like 87