PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754264
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28129 Da    PI: 9.0298
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754264genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.4e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien   rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e++s
  676754264  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFAS 59
               79***********************************************86 PP
2K-box72.99.1e-2582161988
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                +++a+ ++ + e++ Lk+e ++Lq+++ +++G++L+ LslkeLq+LeqqL+ sl ++R++K+ ll +q+ee++ k +el+
  676754264  82 NCKAEDQEACSEVDLLKDEFSKLQEKHLQMQGKGLNILSLKELQHLEQQLNVSLISVRERKELLLSKQLEESRLKVQELR 161
                688999***********************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.898161IPR002100Transcription factor, MADS-box
CDDcd002654.14E-45275No hitNo description
SuperFamilySSF554555.49E-32273IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-1586161IPR002487Transcription factor, K-box
PROSITE profilePS5129710.89987173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFAST  60
GMKKTLLRYG NYQSSPDAPL INCKAEDQEA CSEVDLLKDE FSKLQEKHLQ MQGKGLNILS  120
LKELQHLEQQ LNVSLISVRE RKELLLSKQL EESRLKVQEL RSFLPSINQH YAPTYTRCFA  180
MDPKNSRVNN SCLDDMDCSL QKTNSDTTLQ LGLPGEAQDR RHEGNRESPS SDSVTTSTTR  240
ATAQRIRLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-25176175MEF2 CHIMERA
6byy_B3e-25176175MEF2 CHIMERA
6byy_C3e-25176175MEF2 CHIMERA
6byy_D3e-25176175MEF2 CHIMERA
6bz1_A4e-25176175MEF2 CHIMERA
6bz1_B4e-25176175MEF2 CHIMERA
6bz1_C4e-25176175MEF2 CHIMERA
6bz1_D4e-25176175MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754264
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU226811e-154U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012194.11e-156agamous-like MADS-box protein AGL15 isoform X3
SwissprotQ392951e-142AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1J3CW261e-140A0A1J3CW26_NOCCA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1J3H8J41e-140A0A1J3H8J4_NOCCA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1J3INI31e-140A0A1J3INI3_NOCCA; Agamous-like MADS-box protein AGL15
STRINGBra006214.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-98AGAMOUS-like 15