PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676754294

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GeBP

Protein Properties

Length: 340aa MW: 39613.6 Da PI: 4.5956

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676754294	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	98.1	8.2e-31	65	161	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++++ w+++ e+v+L+G++++++++g s+ +d+d fy +vk+ i++++sk+qlv+K+++LKk+f + +++k+gke f+ ++d+++f ls+ iWg+ 676754294 65 TSKMTWTKNNELVILKGILEYENEKGISYRSDWDVFYCYVKDLINADFSKKQLVNKVKKLKKRFSDTIARSKDGKELFFTLTDDEQVFRLSMLIWGK 161 57899******************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.8E-23	68	160	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MVDTSDSNSG HFEIRQSRKP MKRKHYIIDD EEDEEEEDIS GTEAMLRRRK QPRKNTTPFV 60 HSSPTSKMTW TKNNELVILK GILEYENEKG ISYRSDWDVF YCYVKDLINA DFSKKQLVNK 120 VKKLKKRFSD TIARSKDGKE LFFTLTDDEQ VFRLSMLIWG KNETESASEE DVQDQPKEVL 180 FSIEDVPCEE NEPGSYTRME KEKKCEEEDT RKEEEEKCEE EDMQDQPKEV LVSIKDVPPC 240 EENEPGSDTM MEKEKKCEEE EDGVDEFCVL QDALEAGTVF RTSCKYQKKL LCGNLKNLPA 300 QRKKELIEEW KALLDEEMKL NIKKLTFSAK LANAKTGVSA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676754294

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014800.1	9e-92	GLABROUS1 enhancer-binding protein-like 3 isoform X1
Swissprot	Q9SJM4	1e-65	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	A0A1J3G927	1e-87	A0A1J3G927_NOCCA; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12440	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	1e-53	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]