PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676754478

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C3H

Protein Properties

Length: 694aa MW: 77843.5 Da PI: 4.9569

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676754478	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.8e-06	122	144	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ff++ G C Gd C+F+H 676754478 122 PVPCVFFQK-GMCAKGDMCSFMHT 144 579****.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0014	33	60	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	1.8E-10	35	87	No hit	No description
PROSITE profile	PS50103	9.545	37	61	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.69	63	89	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.092	65	88	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.389	119	146	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.4E-5	119	145	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.59E-6	121	144	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MFASATQQQQ QQQQQQQKKQ SEPASSAEEE ALKWNTDCVY FLASPLTCKK GAECEYRHSE 60 YARMNPRDCY YWLSGNCMNP KCGFRHPPLE GLLGNQGGAP AGSSVQPPPH AAAAHPGVAK 120 QPVPCVFFQK GMCAKGDMCS FMHTPNPSGY KKQHPGEAKP AAGAVDPQFS KNPVENYTGV 180 KKLPDASLPK AVKAHVDVSA GPRVTSAGLR EGRGVDGYIP KHVGYETVVQ KKVVGVPYFN 240 DGNHSTQLLH KYGSDDNNNS FHNGKDADDV LRESSPGFDV LVDNEARDSE YYHVEDGYGR 300 RSQERRNSLN EYDPEFSVMA DGEREAFRDQ RFDRREDRHA WGHRRGSSER GDRSERRVYA 360 EDERSEDILS SDLRYRLAKQ RKVNGMGSVG SHDYAAPDSS VERGYRDSRR NTPRESSISS 420 SRLQGRIKLR ERSNGDEAHF DRRSERGRDR SDLSQGRLRD RIKGRSEEIH SGNHERGLRT 480 PWARRRELED ERRPGFSAPK GIVETKTSRK EESTETSLGK RKSLEEDHHP HKRSGDSFAA 540 PLPFSEILKR KRAAASGGSS NNKDQTPQET VSKEEAGDET KLVTEEKTEV VSETNPTHEA 600 ELEEGTIMEE GEEVIGEEEQ VYEGNEEEQA YEGDELNGEY YYEEGYEEDG EYAYEEGAEG 660 EEVVYAAEDG EEAATEGVEA EGEEDTEKTV EMLS

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MFASATQQQQ QQQQQQQKKQ SEPASSAEEE ALKWNTDCVY FLASPLTCKK GAECEYRHSE  60
YARMNPRDCY YWLSGNCMNP KCGFRHPPLE GLLGNQGGAP AGSSVQPPPH AAAAHPGVAK  120
QPVPCVFFQK GMCAKGDMCS FMHTPNPSGY KKQHPGEAKP AAGAVDPQFS KNPVENYTGV  180
KKLPDASLPK AVKAHVDVSA GPRVTSAGLR EGRGVDGYIP KHVGYETVVQ KKVVGVPYFN  240
DGNHSTQLLH KYGSDDNNNS FHNGKDADDV LRESSPGFDV LVDNEARDSE YYHVEDGYGR  300
RSQERRNSLN EYDPEFSVMA DGEREAFRDQ RFDRREDRHA WGHRRGSSER GDRSERRVYA  360
EDERSEDILS SDLRYRLAKQ RKVNGMGSVG SHDYAAPDSS VERGYRDSRR NTPRESSISS  420
SRLQGRIKLR ERSNGDEAHF DRRSERGRDR SDLSQGRLRD RIKGRSEEIH SGNHERGLRT  480
PWARRRELED ERRPGFSAPK GIVETKTSRK EESTETSLGK RKSLEEDHHP HKRSGDSFAA  540
PLPFSEILKR KRAAASGGSS NNKDQTPQET VSKEEAGDET KLVTEEKTEV VSETNPTHEA  600
ELEEGTIMEE GEEVIGEEEQ VYEGNEEEQA YEGDELNGEY YYEEGYEEDG EYAYEEGAEG  660
EEVVYAAEDG EEAATEGVEA EGEEDTEKTV EMLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676754478

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395804.1	0.0	zinc finger CCCH domain-containing protein 17
Swissprot	Q9ZUM0	0.0	C3H17_ARATH; Zinc finger CCCH domain-containing protein 17
TrEMBL	V4K6A2	0.0	V4K6A2_EUTSA; Uncharacterized protein
STRING	XP_006395804.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8968	12	15

Publications ? help Back to Top
Seok HY, et al. AtC3H17, a Non-Tandem CCCH Zinc Finger Protein, Functions as a Nuclear Transcriptional Activator and Has Pleiotropic Effects on Vegetative Development, Flowering and Seed Development in Arabidopsis. Plant Cell Physiol., 2016. 57(3): p. 603-15 [PMID:26858286] Seok HY, et al. Arabidopsis non-TZF gene AtC3H17 functions as a positive regulator in salt stress response. Biochem. Biophys. Res. Commun., 2018. 498(4): p. 954-959 [PMID:29548822]