PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676754514

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 180aa MW: 20275.7 Da PI: 5.5112

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676754514	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.6	1.8e-37	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C +Ck+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp ++r +a++++ yeA+ r++dP+yG+v+ i++lqqq+ +l+a++ ll+e 676754514 7 PCGGCKFLRRKCVEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISHLPVHDRCEAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVSLQAQVILLRE 106 7*********************9979****************************************************************988877 PP DUF260 100 e 100 e 676754514 107 E 107 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.903	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-35	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPVHD 60 RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VILLREEATR KFPQSDCTEE 120 DKVLAQDMPQ DPHSWFHQVV SDSNHNQVSD VASTSMDRNE SFCSSNDSLY YQELMFPWST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-36	3	110	7	113	LOB family transfactor Ramosa2.1
5ly0_B	5e-36	3	110	7	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676754514

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473850	1e-139	AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410263.1	1e-121	LOB domain-containing protein 14
Swissprot	Q9SJW5	1e-101	LBD14_ARATH; LOB domain-containing protein 14
TrEMBL	V4NXR6	1e-119	V4NXR6_EUTSA; Uncharacterized protein
STRING	XP_006410263.1	1e-120	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31310.1	2e-86	LOB domain-containing protein 14

Publications ? help Back to Top
Jeon E, et al. LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis. Plant Cell Physiol., 2017. 58(12): p. 2190-2201 [PMID:29040694]