PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676754740

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 173aa MW: 19195 Da PI: 6.836

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676754740	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	46.3	1.2e-14	13	66	1	60
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamss 60 +C aCk+lrrkCak+Cv+apyf++eq +++fa++hk+ + l++lk+ +a++s 676754740 13 PCGACKFLRRKCAKGCVFAPYFCHEQgASHFAAIHKVVNLQAQLEILKQ-------QAAQS 66 7***********************89*******999888888887.......33444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.231	12	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-11	13	63	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MSSSSSSSGS GSPCGACKFL RRKCAKGCVF APYFCHEQGA SHFAAIHKVV NLQAQLEILK 60 QQAAQSMMFA DSPSSENPNS YYGDTTKTPS YHHDQQEHQN IYHHHGQTHL ANQIGNSGMG 120 QHGDATANSY PPEKSRGFGE FSIYPELEQH LNTFNQEYLK ELHSENFGYI SFS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676754740

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473849	3e-57	AB473849.1 Arabidopsis thaliana ASL16 mRNA for ASYMMETRIC LEAVES2-like 16 protein, complete cds.
GenBank	AF447893	3e-57	AF447893.1 Arabidopsis thaliana LOB DOMAIN 29 (LBD29) mRNA, complete cds.
GenBank	AL137081	3e-57	AL137081.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F9D24.
GenBank	BT025282	3e-57	BT025282.1 Arabidopsis thaliana At3g58190 mRNA, complete cds.
GenBank	CP002686	3e-57	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013659935.1	5e-92	LOB domain-containing protein 29
Swissprot	Q9M2J7	2e-83	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	A0A291LR11	1e-90	A0A291LR11_BRARR; Transcription factor LBD29
TrEMBL	A0A397Y6T0	1e-90	A0A397Y6T0_BRACM; Uncharacterized protein
STRING	Bo8g092560.1	2e-89	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-85	lateral organ boundaries-domain 29

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]