PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754800
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 262aa    MW: 29690.7 Da    PI: 9.1616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754800genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021227247121
                EEETTTTEEESSHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                ++C+ Cg+++ ++s L+ Hi 
  676754800 227 FQCKVCGERYFSNSCLTAHIE 247
                89*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1586392.35E-873145IPR005491ENT domain
PROSITE profilePS5113811.71378165IPR005491ENT domain
SMARTSM011911.7E-478151IPR005491ENT domain
PfamPF037352.1E-1482144IPR005491ENT domain
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDKKDQHSDS PAEEQARLPF KKRGSAELSL MADQKNQRSD PPAEERARLP FKKRGSAEKS  60
LPESNYFHGF FFPTATDKKI NLDQLKRVVF YNVLRAFAAD SSAISAPRIM IIKELKNEWK  120
INNLTHTAFQ KRLKRDTEVQ ELRKEKEQVH ATAEEPKSPP LEPSLASHGS GKEIATAARE  180
LKPRLEVNKD DVLKLQERLN VAPAKIPKDE GEPSSTTLEE PLIHTSFQCK VCGERYFSNS  240
CLTAHIEQKE CTSNFTAMTK TV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022546917.12e-40protein EMSY-LIKE 1-like
TrEMBLA0A397Y3P42e-37A0A397Y3P4_BRACM; Uncharacterized protein
TrEMBLA0A397Y8W95e-37A0A397Y8W9_BRACM; Uncharacterized protein
STRINGBra007370.1-P2e-36(Brassica rapa)