PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754888
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 247aa    MW: 27641.3 Da    PI: 8.2764
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754888genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06219241223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp+C++ F+++ +L +Hi + H
  676754888 219 VCPKCSRGFRDPVDLLKHIDKdH 241
                7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.02E-12457No hitNo description
PROSITE profilePS510397.8031059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.6E-101150IPR000058Zinc finger, AN1-type
SMARTSM001547.8E-51352IPR000058Zinc finger, AN1-type
PfamPF014281.2E-131349IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.0E-991148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.7E-993146No hitNo description
PROSITE profilePS510398.05798151IPR000058Zinc finger, AN1-type
SMARTSM001540.017101142IPR000058Zinc finger, AN1-type
PfamPF014288.6E-8101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.016218246IPR007087Zinc finger, C2H2
PROSITE patternPS000280220241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CIQVFCLDHR SYMKHNCPKG NRGDVTVVIC  60
PLCAKGVRLN PDEDPNITWE KHVNSDCDPS NYEKTVKKNK CPVPRCRELL TFSNTIKCRD  120
CTIEHCLKHR FGPDHSCSGP KKPDSSFSFM GGFFSTNTKE APASSSSSSR WSSLFASAEA  180
SITRLGNDIT NKLQFASGDD AHVQERNRKQ NCGKVTVDVC PKCSRGFRDP VDLLKHIDKD  240
HRGSSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754888
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894574e-97AC189457.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319783.11e-159zinc finger (C2H2 type, AN1-like) family protein
RefseqNP_191307.11e-159zinc finger (C2H2 type, AN1-like) family protein
SwissprotQ9SCM41e-161SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLV4NE371e-155V4NE37_EUTSA; Uncharacterized protein
STRINGAT3G57480.11e-159(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-145C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]