PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754980
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family FAR1
Protein Properties Length: 323aa    MW: 36672.3 Da    PI: 6.8863
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754980genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.62.4e-29158245291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p
  676754980 158 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLMP 245
                9******************************************999..999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-27158245IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKNSGHTGLT GYCVPCNPYP EPAPSLSLPH HRKPKVDRRR LRPLSAGGDS PRKNSDMDFR  60
IDNGDAAGMM MGIPVELEVT TVENHNEMGE SSGQAMIEQD DESHNEIGES SGQAMPLEQD  120
EKVDPDSIPL AVADMAEVQA DEPYVGQEFE SEAAAHGFYN AYATKVGFVI RVSKLSRSRH  180
DGSPIGRQLV CNKEGYRLPS KRDKVIRQRA ETRVGCRAMI LIRKENSGKW VITKFVKEHN  240
HPLMPGRVRR GCIYDQYPNE HDKIQELMQQ LAAEKKRAAT YKRHLEMLFE QIEQHNESLT  300
KRIQHIVDNV RDLEQRDHQQ NQV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754980
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882000.10.0protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
TrEMBLA0A1J3HF380.0A0A1J3HF38_NOCCA; Protein FAR1-RELATED SEQUENCE 5
STRINGBostr.20903s0171.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-178FAR1 family protein