PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676755556
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 460aa    MW: 52303.5 Da    PI: 4.5758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676755556genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-17244293255
        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++aa++ + g
  676755556 244 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAALAYDAAARTISG 293
                799******.**********66.....34**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.79.103.8E-2510172IPR015797NUDIX hydrolase domain-like
SuperFamilySSF558111.49E-2112168IPR015797NUDIX hydrolase domain-like
PROSITE profilePS5146215.36118168IPR000086NUDIX hydrolase domain
CDDcd046668.22E-5121161No hitNo description
PfamPF002937.6E-1248166IPR000086NUDIX hydrolase domain
PROSITE patternPS0089306687IPR020084NUDIX hydrolase, conserved site
PROSITE profilePS5103220.455244301IPR001471AP2/ERF domain
SMARTSM003801.8E-30244307IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-27244300IPR001471AP2/ERF domain
PfamPF008472.7E-11244291IPR001471AP2/ERF domain
CDDcd000189.75E-15244300No hitNo description
SuperFamilySSF541719.81E-20244301IPR016177DNA-binding domain
PRINTSPR003672.5E-8245256IPR001471AP2/ERF domain
PRINTSPR003672.5E-8267283IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSVLSSRTGR DRQRYDNNFR LVSGCIPYRV IKDEEVEEDP SVDFVNKLQV LMVSSPNRHD  60
LVFPKGGWED DETVLEAASR EAMEEAGVKG ILREDPLGVW EFRSKSSSCV VEDECFGGCK  120
GYMFALEVTE ELGDWPEREN RQRKWLNVKE ALELCRYEWM QRALEEFLRV MEDEGKLRTE  180
EETVQDDSSK PEECQIDPCF VLISMTMSSS QLGLAPYIPH VQPWAFLCLN KGKSKQEKKS  240
QEVKYLGVRR RPWGRYAAEI RNPFTKERHW LGTFDTAEEA ALAYDAAART ISGSLAKTNF  300
FYTENISLQR QPQQLLQSSS DKDFVNPVLS LGSSSFCFLQ DQPPENRFVS DPISSFLQEQ  360
HFSASLTNGF SRCYNNAHVG KGREISLPSL PNDMSSSLFG YQDNAGVHAD EDHMKMISSV  420
FSDEPHSFGY DFLLSDMPTS LLNDLNGDPS QVIGSSSYFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-162443061477Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMap676755556
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561780.0AY056178.1 Arabidopsis thaliana unknown protein (At1g12880) mRNA, complete cds.
GenBankAY0912640.0AY091264.1 Arabidopsis thaliana unknown protein (At1g12880) mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.19e-67ERF family protein