PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676755794
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 192aa    MW: 22181.7 Da    PI: 11.1496
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676755794genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.8e-291568255
    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               pr++W+ +LH++F+++ve+LGG+ kAtPk+i+++m+v  Lt++hvkSHLQ+YR 
  676755794 15 PRMQWSIDLHRHFIHVVEELGGERKATPKKIVQAMGVRNLTISHVKSHLQMYRN 68
               8****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6341171IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-261170IPR009057Homeodomain-like
SuperFamilySSF466891.04E-131472IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-231570IPR006447Myb domain, plants
PfamPF002491.2E-71667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEKTVVRSYT KSKIPRMQWS IDLHRHFIHV VEELGGERKA TPKKIVQAMG VRNLTISHVK  60
SHLQMYRNKQ QEESVQERRV RRAMRWRQSQ QQLQIYKRIR DATKFIQNQR RLSDIRNKIT  120
GFPKPINKTM EVSCKSLFQS SRVGLNEIRG IAIHADDDVV VAGDGAKTPL NSTGVSKGKD  180
ELSLELTLGL KH
Cis-element ? help Back to Top
SourceLink
PlantRegMap676755794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022543894.11e-79putative Myb family transcription factor At1g14600 isoform X2
RefseqXP_022547496.11e-79putative Myb family transcription factor At1g14600 isoform X2
TrEMBLM4EL369e-78M4EL36_BRARP; Uncharacterized protein
STRINGBra029503.1-P2e-78(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.12e-45G2-like family protein