PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676755936

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 253aa MW: 28848.4 Da PI: 6.2526

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676755936	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.2	4.6e-38	5	136	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +G+rF Ptdee+v++yL+ k g +++l + i+ v+i++++P dLp + +++++++ wyfF ++++ky++g++++r+tksg+Wk+tg ++++++ +g++ 676755936 5 VGLRFLPTDEEIVDHYLRLKNLGGSTSLVDQvISAVNICSFDPLDLPsQsRMESNDQVWYFFGRKKRKYNRGEQQSRKTKSGFWKKTGVTTNIMR-RGQK 103 7****************9999886665444**********96358888999***********************************.999 PP NAM 100 vglkktLvfy.kgrapkge....ktdWvmheyr 127 +g kk+Lvf + ++p+ + k+dWv+hey 676755936 104 IGEKKVLVFQyTTKTPEISgsksKSDWVIHEYV 136 *******7533444322223399*****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-40	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	40.158	3	156	IPR003441	NAC domain
Pfam	PF02365	6.1E-21	5	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MVYLVGLRFL PTDEEIVDHY LRLKNLGGST SLVDQVISAV NICSFDPLDL PSQSRMESND 60 QVWYFFGRKK RKYNRGEQQS RKTKSGFWKK TGVTTNIMRR GQKIGEKKVL VFQYTTKTPE 120 ISGSKSKSDW VIHEYVATLL SPNQMMTYTL CKVMFKGDER DLSSSGGGEI EHNQSLITHM 180 NYSGGVDEGS SFDCLHSQEL QNPRQFSGFL NVEEESRLED AVRSAINNLS NHELNCLLNG 240 DDEEQGNIMF NQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-26	6	135	18	138	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676755936

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639076.1	1e-94	PREDICTED: NAC domain-containing protein 5-like
Swissprot	O81914	3e-84	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A0D3C727	2e-93	A0A0D3C727_BRAOL; Uncharacterized protein
STRING	Bo5g002960.1	4e-94	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-86	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]