PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676755966
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22745.4 Da    PI: 9.7968
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676755966genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF657.8e-215098149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k i+ +s+r+vtfskRr g++KKA ELSvL++a++av+ fs+ g++y +
  676755966 50 KEIQVTSKRHVTFSKRRRGMFKKAAELSVLTGAKIAVLTFSKCGRIYSF 98
               5688899****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-2342101IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.59142102IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-2143129IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-174464IPR002100Transcription factor, MADS-box
PfamPF003198.5E-205298IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-176479IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-1779100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEEVKKTSSS TFLTPNDQLV NPNVLLSQPK KEFTSQTPKK SRGRQKIEIK EIQVTSKRHV  60
TFSKRRRGMF KKAAELSVLT GAKIAVLTFS KCGRIYSFGH VDSLIDKYLR KMPVNLEVYP  120
AEEEGKPWWE RPVESVPDDE LEEYIACMSM LRDKLVNKII GMSNVEIAPA WPINMMGWKP  180
QMDMQILENQ IRLGQNDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A7e-1444981872PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B7e-1444981872PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676755966
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117708.12e-95PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM4ED144e-94M4ED14_BRARP; Uncharacterized protein
STRINGBra026674.1-P7e-95(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.17e-78M-type_MADS family protein