PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676756296
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 284aa    MW: 32791.6 Da    PI: 4.9811
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676756296genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.21.6e-4961391128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                lppGfrFhPtd+elv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r nratksgyWkatgkd++++++   
  676756296   6 LPPGFRFHPTDDELVGYYLHRRNEGLEIEL-EIIPLTDLYKFDPWELPeKsFLPNRDLEWFFFCHRDRKYQNGSRINRATKSGYWKATGKDRKIVCQssa 104
                79****************************.89**************95334445677**************************************9666 PP

        NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++ + ++ktLvfy grap g++t+W mheyrl
  676756296 105 ssSSTIIACRKTLVFYLGRAPFGSRTEWAMHEYRL 139
                655556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-564164IPR003441NAC domain
PROSITE profilePS5100554.2736164IPR003441NAC domain
PfamPF023651.1E-267139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVGSYLPPGF RFHPTDDELV GYYLHRRNEG LEIELEIIPL TDLYKFDPWE LPEKSFLPNR  60
DLEWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRKIVC QSSASSSSTI IACRKTLVFY  120
LGRAPFGSRT EWAMHEYRLC DNDTTSQGAL NFKGDFALCR VIKRNEVTLK KCETSSPEVS  180
NEPLSSDVEI PCDASYLGKG SRDASNNTQW ASPDFMLESS TKGNSQSQTE EDSSFQVFAL  240
PELEYPPDFL TDLNFDWEME NPSIFNSYQE AHMNHEVMNY HVLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-47617017171NO APICAL MERISTEM PROTEIN
1ut4_B8e-47617017171NO APICAL MERISTEM PROTEIN
1ut7_A8e-47617017171NO APICAL MERISTEM PROTEIN
1ut7_B8e-47617017171NO APICAL MERISTEM PROTEIN
4dul_A8e-47617017171NAC domain-containing protein 19
4dul_B8e-47617017171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00175DAPTransfer from AT1G32510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676756296
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026842e-84CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D142e-84AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603126.11e-170PREDICTED: NAC domain-containing protein 86 isoform X1
RefseqXP_022561630.11e-170NAC domain-containing protein 71-like
SwissprotO496973e-89NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A0D3DKT51e-168A0A0D3DKT5_BRAOL; Uncharacterized protein
STRINGBo8g028730.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150291719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.11e-149NAC domain containing protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]