PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676756686
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WOX
Protein Properties Length: 237aa    MW: 27817 Da    PI: 6.1765
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676756686genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.6e-2142100356
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                +R+++t+eq+++Lee++++ +r+p++e+++e+A+kl    +++ ++V++WFqN++a+e+
  676756686  42 SRWNPTSEQIRTLEEFYRReTRTPTTEQIQEIASKLrkygKVEGKNVFYWFQNHKARER 100
                7*****************88*************************************98 PP
2Wus_type_Homeobox105.24.1e-3441102364
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        ++RW+Pt+eQi+ Lee y++ +rtP++e+iq+i+++L++yGk+e+kNVfyWFQN+kaRer k
          676756686  41 TSRWNPTSEQIRTLEEFYRRETRTPTTEQIQEIASKLRKYGKVEGKNVFYWFQNHKARERLK 102
                        79**********************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.59637102IPR001356Homeobox domain
SMARTSM003891.6E-639106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-942100IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1242101IPR009057Homeodomain-like
PfamPF000465.0E-1942100IPR001356Homeobox domain
CDDcd000864.02E-743100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0016049Biological Processcell growth
GO:0048314Biological Processembryo sac morphogenesis
GO:0048446Biological Processpetal morphogenesis
GO:0048482Biological Processplant ovule morphogenesis
GO:0051301Biological Processcell division
GO:0048353Cellular Componentprimary endosperm nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAFLVIHTFD FAGDINGNDH RHELITDSSG ELSDQKHNLP TSRWNPTSEQ IRTLEEFYRR  60
ETRTPTTEQI QEIASKLRKY GKVEGKNVFY WFQNHKARER LKRRRCEGDD DINNVFEPLK  120
DVKDSSSGGF RVDQSHQTKS CPSFPHTNPQ PQKELVLENY TKDATWRNLV TSLITQEPGE  180
INGEVELEEE TREIRTLNLF PVVENQEQTD GFTEKKKTKA NRMCCNCCYY YEFMPLK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676756686
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022565363.11e-100WUSCHEL-related homeobox 6, partial
SwissprotQ9ZVF52e-81WOX6_ARATH; WUSCHEL-related homeobox 6
TrEMBLV4KQ452e-98V4KQ45_EUTSA; Uncharacterized protein
STRINGXP_006398542.13e-99(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.15e-73WOX family protein