PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676756730

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GRF

Protein Properties

Length: 420aa MW: 46337.9 Da PI: 6.7589

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676756730	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.6	5.2e-24	175	219	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rC+RtDGKkWRCsr v++++k+CErH h++r rsrk++e+ 676756730 175 DMEPWRCKRTDGKKWRCSRSVIPDQKYCERHTHKSRPRSRKHVES 219 79****************************************986 PP
2	QLQ	52.8	1.2e-18	112	146	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 aF+ aQ+q+L++Q +yKy++a++PvP+eLl + + 676756730 112 AFSEAQWQELERQRNIYKYMMASVPVPSELLTPFS 146 8******************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.7E-11	111	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.5E-12	112	144	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.688	112	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.895	175	219	IPR014977	WRC domain
Pfam	PF08879	1.2E-19	176	218	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MGTRAEHNKE DFVGGFGFGV VEHSHREVMV PSHHHHYPSY SSPSSSSFCY RSVGVSDPVL 60 SASSNQAYTS SFGEMFSLGG SNPAAVSVAD PFFTLSPSGE MGRSMSEKEG AAFSEAQWQE 120 LERQRNIYKY MMASVPVPSE LLTPFSKNPS NTNNQDVTVA KGSSLKLGIA SNAADMEPWR 180 CKRTDGKKWR CSRSVIPDQK YCERHTHKSR PRSRKHVEST HHNDTRTTKN DTSPYARTYP 240 QFYGQPATPF SALSTLPSAS SSDDHHREFR WFMKEGDGNA NLNVAVHEAV QLKVGSSSEL 300 KRGFDYDLNF RQTEPLVDQS FGALEGLLSP NETPQNQETR RFFVEGDQDE AMGSSLTLSM 360 AGGAMEEAER TNQHQWVSHE VPSWLCSTTP GGPLAEALFL GVSNNRSTST TTSSCSRSSS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MGTRAEHNKE DFVGGFGFGV VEHSHREVMV PSHHHHYPSY SSPSSSSFCY RSVGVSDPVL  60
SASSNQAYTS SFGEMFSLGG SNPAAVSVAD PFFTLSPSGE MGRSMSEKEG AAFSEAQWQE  120
LERQRNIYKY MMASVPVPSE LLTPFSKNPS NTNNQDVTVA KGSSLKLGIA SNAADMEPWR  180
CKRTDGKKWR CSRSVIPDQK YCERHTHKSR PRSRKHVEST HHNDTRTTKN DTSPYARTYP  240
QFYGQPATPF SALSTLPSAS SSDDHHREFR WFMKEGDGNA NLNVAVHEAV QLKVGSSSEL  300
KRGFDYDLNF RQTEPLVDQS FGALEGLLSP NETPQNQETR RFFVEGDQDE AMGSSLTLSM  360
AGGAMEEAER TNQHQWVSHE VPSWLCSTTP GGPLAEALFL GVSNNRSTST TTSSCSRSSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676756730

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL109619	1e-125	AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBank	AL161561	1e-125	AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBank	ATAC002343	1e-125	AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBank	CP002687	1e-125	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413469.2	0.0	growth-regulating factor 8 isoform X1
Swissprot	Q9SU44	0.0	GRF8_ARATH; Growth-regulating factor 8
TrEMBL	V4MHX2	0.0	V4MHX2_EUTSA; Uncharacterized protein
STRING	XP_006413469.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7836	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	0.0	growth-regulating factor 8

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]