PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676757326
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family AP2
Protein Properties Length: 610aa    MW: 68350.1 Da    PI: 7.1216
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676757326genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-15402453155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  676757326 402 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 453
                57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.44E-13271369No hitNo description
Gene3DG3DSA:3.30.730.103.8E-7272294IPR001471AP2/ERF domain
SMARTSM003802.8E-15272373IPR001471AP2/ERF domain
PROSITE profilePS5103213.946272367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-7334367IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-6338368IPR016177DNA-binding domain
SuperFamilySSF541711.18E-17402462IPR016177DNA-binding domain
CDDcd000182.65E-11402461No hitNo description
PfamPF008474.3E-10402453IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-18403461IPR001471AP2/ERF domain
SMARTSM003807.9E-31403467IPR001471AP2/ERF domain
PROSITE profilePS5103219.111403461IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ATSAASSSPY LLDNFYGWTN QKPQEFFKEE  60
AQIAASMADS TVLTTFVDPQ THHIPKLEDF LGDSSSIVRY SDNSQTETQD SSLTQIYDPR  120
HHHNNHNQNQ NHHQTGFYSD HSHDFKTMAG FQTAFSTNSG SEVDDSASIG RTHLNGEYLG  180
HVVESSGPEL SFHGGATTGG ALSLGVNINN ASQRSTETNQ ITEHHYRGTN NNNNNNNSEK  240
TDSEKEKPVV AVETSDSSNK KIADTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA  300
RKGRQAEGCR HFVPLSLLHF LSFQNSLISH LHILKPKGGY DKEDKAARAY DLAALKYWNA  360
TATTNFPITN YSKELEEMKH MTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI  420
GRVAGNKDLY LGTFATEEEA AEAYDIAAIK FRGINAVTNF EMNRYDVEAI MKSALPIGGA  480
AKRLKLSLES ASAEQKPILG HHQLHHFQQQ QQQQQLQLQS SPNHSSINFA LCPNSAVQSQ  540
MIPCGIPFEA AALYHHQQQQ QQQQQNFFQH FPANAASDST GSNNNSNVQG SMGLMAPNPA  600
EFFLWPNQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676757326
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9741970.0AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399549.10.0AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_024011965.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLV4LF510.0V4LF51_EUTSA; Uncharacterized protein
STRINGXP_006399549.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.30.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]