PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676757680

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

FAR1

Protein Properties

Length: 843aa MW: 95652.5 Da PI: 6.6873

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676757680	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.4	7.1e-11	52	127	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHel 89 +fY+eYA+++ F+++ k+ t r+fvC ++ ++++++k+ r++ C+a++++++++ +kw+vtk+++eH+H l 676757680 52 SFYDEYARQLSFTTKLLPPKTD------TFREFVCCNSSSSNKRSKR-------RPV--ELCEAMVRIEMKSqdFDKWVVTKFVKEHSHGL 127 5************9997777......7899999888877666.......444..46888888887776589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-6	53	127	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-23	239	330	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.608	517	553	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-9	523	551	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-8	528	555	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MDDIHLVNEM GADDSACSGT NHIENPLIVQ DEIGVAEPCV GMEFNSEKEA KSFYDEYARQ 60 LSFTTKLLPP KTDTFREFVC CNSSSSNKRS KRRPVELCEA MVRIEMKSQD FDKWVVTKFV 120 KEHSHGLGSS NTLHCLRPRR HFANSEKTNF QEGVNVPSGM MYVSMDGNNR GRVGSKGVGT 180 KRTLGRDAHN LLEYFKRMQA DNPGFFYAIQ LDDESNQMTN VFWADSRSRI AYTHFGDTVT 240 LDTRYRCNQF RVPFAPFTGV NHHGQTILFG CALILDESEA SFIWLFKTFL TGMRDHPPVS 300 LVTDQDRAIQ VAAAQVFPGA RHCINKWDVL REGQEKLAHV NLAYPSFQVE LYNCINFTET 360 IEEFESSWSS IIEKYDLGRH EWLCSLYNAR AQWVPVYFRD SFFAAVFPSQ GYPGSFFDGY 420 VNQQTTLPMF FRLYERAMES WFEMEIEADL DTVNTPPVLK TPSPMENQAA NLFTRKIFAK 480 FQAELVETFA YTANRIDDDG ASTTFRVAKF ENDNKAYIVS FCYPEMRANC SCQMFEHSGI 540 LCRHVLTVFT VTNILTLPPH YILRRWTRNA KSVVGLDEHV SENGNDSLIH RYNHLCREAI 600 KYAEEGAITT ETYNIALGAL REGEKKVSLV RKNVGRPLSS HGGGIGIDEK SSPSAADSTP 660 LLWPRQDEMI RRFNLNDGVV RAQSVSDLNL PRMAPVSLHR DDGAPENMVA LPCLKSMTWA 720 WGMESKNSVP GGRVAIINLK LHDYRKFPPA DMEVKFQLSS VTLEPMLRSM AYINEQLSAP 780 ANRVAVINLK LQDTETTTGE SEVKFQVSRD ALGAMLRSMA YIREQLAIVG LLQTEPQAKK 840 LRK

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MDDIHLVNEM GADDSACSGT NHIENPLIVQ DEIGVAEPCV GMEFNSEKEA KSFYDEYARQ  60
LSFTTKLLPP KTDTFREFVC CNSSSSNKRS KRRPVELCEA MVRIEMKSQD FDKWVVTKFV  120
KEHSHGLGSS NTLHCLRPRR HFANSEKTNF QEGVNVPSGM MYVSMDGNNR GRVGSKGVGT  180
KRTLGRDAHN LLEYFKRMQA DNPGFFYAIQ LDDESNQMTN VFWADSRSRI AYTHFGDTVT  240
LDTRYRCNQF RVPFAPFTGV NHHGQTILFG CALILDESEA SFIWLFKTFL TGMRDHPPVS  300
LVTDQDRAIQ VAAAQVFPGA RHCINKWDVL REGQEKLAHV NLAYPSFQVE LYNCINFTET  360
IEEFESSWSS IIEKYDLGRH EWLCSLYNAR AQWVPVYFRD SFFAAVFPSQ GYPGSFFDGY  420
VNQQTTLPMF FRLYERAMES WFEMEIEADL DTVNTPPVLK TPSPMENQAA NLFTRKIFAK  480
FQAELVETFA YTANRIDDDG ASTTFRVAKF ENDNKAYIVS FCYPEMRANC SCQMFEHSGI  540
LCRHVLTVFT VTNILTLPPH YILRRWTRNA KSVVGLDEHV SENGNDSLIH RYNHLCREAI  600
KYAEEGAITT ETYNIALGAL REGEKKVSLV RKNVGRPLSS HGGGIGIDEK SSPSAADSTP  660
LLWPRQDEMI RRFNLNDGVV RAQSVSDLNL PRMAPVSLHR DDGAPENMVA LPCLKSMTWA  720
WGMESKNSVP GGRVAIINLK LHDYRKFPPA DMEVKFQLSS VTLEPMLRSM AYINEQLSAP  780
ANRVAVINLK LQDTETTTGE SEVKFQVSRD ALGAMLRSMA YIREQLAIVG LLQTEPQAKK  840
LRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676757680

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY057491	0.0	AY057491.1 Arabidopsis thaliana At2g27110/T20P8.16 mRNA, complete cds.
GenBank	BT002690	0.0	BT002690.1 Arabidopsis thaliana At2g27110/T20P8.16 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293662.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020883133.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_020883134.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_020883135.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	R0HMV5	0.0	R0HMV5_9BRAS; Uncharacterized protein
STRING	XP_006293662.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]