PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676757812
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 204aa    MW: 23663.6 Da    PI: 9.3129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676757812genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71.1e-11121162351
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                 +GV++ k + +W A I++      +++++lg+f + eeAa+++++a+ 
  676757812 121 LRGVYY-K-NMKWQAAIKVD-----KRQIHLGTFSSQEEAARLYDRAAF 162
                59**96.5.7*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.177109175IPR001471AP2/ERF domain
SMARTSM003806.7E-7120177IPR001471AP2/ERF domain
PfamPF008471.2E-6121163IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-9121165IPR016177DNA-binding domain
CDDcd000184.90E-12122173No hitNo description
Gene3DG3DSA:3.30.730.101.2E-8122167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEKGGGGPNG YVTPLPFLTA EEMITGIPNP NGVAAYNHEP AETVIQPKEE ETHIEERSRS  60
QRQRTPSKYM QFRSDFSDIS PDDSGSISPK WDQDICDSDQ PLKRRKRHSR KQVKNQEPCL  120
LRGVYYKNMK WQAAIKVDKR QIHLGTFSSQ EEAARLYDRA AFMCGREPNF ELSEEEKQKL  180
KRQSWEGFLA CTRRKITNKS KVYY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676757812
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451862.11e-109PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
SwissprotQ56XP93e-90ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLM4F1E91e-107M4F1E9_BRARP; Uncharacterized protein
STRINGBra034895.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.15e-81ERF family protein