PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676758186
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARR-B
Protein Properties Length: 401aa    MW: 45041.1 Da    PI: 8.3989
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676758186genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.99.3e-28197250155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k r++W+ eLH++Fv+a+++L G++kA+Pk+ile+m+v+gL++e+v+SHLQkYRl
  676758186 197 KSRVVWSMELHQQFVNAINHL-GIDKAVPKRILEMMNVPGLSRENVASHLQKYRL 250
                68*******************.********************************8 PP
2Response_reg73.39.8e-25131211109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + + +l+++l +  y +v+ +++++ al++l+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +++ + ++ Ga 
     676758186  13 VLVVDDDASCLIILEKMLLRLMY-QVTICSQADVALTMLRERKgcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSVDGRTTTVMKGINHGAC 107
                   89*********************.*******************************************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ peel +
     676758186 108 DYLIKPIRPEELKN 121
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.8E-1441399IPR017053Response regulator B-type, plant
SuperFamilySSF521729.96E-359135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.4E-4110156No hitNo description
SMARTSM004483.0E-2911123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.95612127IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.6E-2213121IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.96E-2814126No hitNo description
PROSITE profilePS512949.419194253IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-28194255IPR009057Homeodomain-like
SuperFamilySSF466899.5E-19195254IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-25197250IPR006447Myb domain, plants
PfamPF002495.3E-7199249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTISDHFPSG LRVLVVDDDA SCLIILEKML LRLMYQVTIC SQADVALTML RERKGCFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS VDGRTTTVMK GINHGACDYL IKPIRPEELK  120
NIWQHVVRRK CTINKELPRT CQTLGNNKIS SSSSLETGFS VTECSEGSLK RRKNKRRVDR  180
EDHEEDDLLD PGNSSKKSRV VWSMELHQQF VNAINHLGID KAVPKRILEM MNVPGLSREN  240
VASHLQKYRL YLRRLSGVAS ESRDAESMER YENIQALVSS GQIHPQALAA LYGRPIDNHM  300
SGGFGVWRPS DNNHLGGSQN ESFTIDVASA SNRGLGALNG HVSVAASVAV HGLSSSSNLR  360
QQCDDFNNNT DYRFKQGNAS SVNEESWIFE RPSRQRKNHR Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-20194256264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676758186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532220.0AK353222.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395852.20.0LOW QUALITY PROTEIN: two-component response regulator ARR14
SwissprotQ8L9Y30.0ARR14_ARATH; Two-component response regulator ARR14
TrEMBLA0A078JD470.0A0A078JD47_BRANA; Two-component response regulator
STRINGBo2g134560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.10.0response regulator 14