PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676758300

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

FAR1

Protein Properties

Length: 786aa MW: 90080.2 Da PI: 6.3773

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676758300	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.5	3.4e-31	82	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ ++++HnHel+p 676758300 82 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVP 173 9*************************************999888555667889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-29	82	173	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-32	294	386	IPR018289	MULE transposase domain
Pfam	PF04434	7.8E-11	562	608	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.423	574	610	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	585	612	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MENEVLDFDI GVGVSSGGDV DDDAIDIEHH EGVDEDDMLD SPMPGISVGN SDAGNYFPEG 60 DLLDLEPYEG LEFESEEAAK AFYNSYARRI GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF 120 RNMNEKRTKD REIKRPRTIT RVGCKASLSV KMQDSGKWLV SGFVKDHNHE LVPPDQVHCL 180 RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQKSI 240 EGEIQLLLDY LRQMNADNPN FFYAVQGSED QSVGNVFWAD PKAIMDFSYF GDTVTFDTTY 300 RSNRYRLPFA PFTGVNHHGQ PILFGCAFII NETEASFAWL FKTWLAAMST HPPLSITTDH 360 DAVIRAAIMQ VFPGARHRFC KWHIFKKCQE KLSHVFLRHP SFESDFHKSV NLTESVEDFD 420 SCWFSLLDKY ELRGHEWLQA IYSDRRHWVP VYLRDTFFAE MSSTQRSDSM NSYFDGYINA 480 STNLSQFFKL YEKALESRLE KEVKADYDTM NSPPVLKTPS PMEKQASELY TRKLFMRFQE 540 ELVGTLTFMA SKSDDDGDLV TYQVAKYGEA HKAHFVKFNI LEMRANCSCQ MFEFSGIVCR 600 HILAVFRVTN LLTLPPYYIL KRWTRNAKSS VIFDDYGLHA YDNYLESHTV RYNTLRHKAS 660 NFVQEAGKSL YTCDVAVVAL QEAAKTVSLA MKNEVGRTMA NGHAKESGTD GNRMCCNEDC 720 QQEEPEVRKI IFFPMLVIFA KMAIKFVYLN IYSFAQEKEN LMFWFFPGQP MFCLFDGIVG 780 EFSVIV

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MENEVLDFDI GVGVSSGGDV DDDAIDIEHH EGVDEDDMLD SPMPGISVGN SDAGNYFPEG  60
DLLDLEPYEG LEFESEEAAK AFYNSYARRI GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF  120
RNMNEKRTKD REIKRPRTIT RVGCKASLSV KMQDSGKWLV SGFVKDHNHE LVPPDQVHCL  180
RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQKSI  240
EGEIQLLLDY LRQMNADNPN FFYAVQGSED QSVGNVFWAD PKAIMDFSYF GDTVTFDTTY  300
RSNRYRLPFA PFTGVNHHGQ PILFGCAFII NETEASFAWL FKTWLAAMST HPPLSITTDH  360
DAVIRAAIMQ VFPGARHRFC KWHIFKKCQE KLSHVFLRHP SFESDFHKSV NLTESVEDFD  420
SCWFSLLDKY ELRGHEWLQA IYSDRRHWVP VYLRDTFFAE MSSTQRSDSM NSYFDGYINA  480
STNLSQFFKL YEKALESRLE KEVKADYDTM NSPPVLKTPS PMEKQASELY TRKLFMRFQE  540
ELVGTLTFMA SKSDDDGDLV TYQVAKYGEA HKAHFVKFNI LEMRANCSCQ MFEFSGIVCR  600
HILAVFRVTN LLTLPPYYIL KRWTRNAKSS VIFDDYGLHA YDNYLESHTV RYNTLRHKAS  660
NFVQEAGKSL YTCDVAVVAL QEAAKTVSLA MKNEVGRTMA NGHAKESGTD GNRMCCNEDC  720
QQEEPEVRKI IFFPMLVIFA KMAIKFVYLN IYSFAQEKEN LMFWFFPGQP MFCLFDGIVG  780
EFSVIV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676758300

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	AY136457	0.0	AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411599.2	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4MD13	0.0	V4MD13_EUTSA; Uncharacterized protein
STRING	XP_006411599.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]