PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676759086

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GRAS

Protein Properties

Length: 531aa MW: 59429 Da PI: 5.2523

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676759086	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	344.9	1.4e-105	173	531	8	374
GRAS 8 cAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleave 107 cA +s + a ++L r++e +s++g+p++R+ +yf+eAL+++l+ ++ + ++ + ++k++++++P+ kf+hltaNqaIlea+ 676759086 173 CAG-ISGIKPDVAAETLVRIRESVSESGNPTERVGFYFAEALSNKLSP------------TS---SLEDFILSYKTLNDACPYTKFAHLTANQAILEATY 256 555.5566777899******************************98............23...3789*************************** PP GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204 +++ +Hi+Df+i qG+QW++LlqaLa+R++g+p ++Ri g+ +p+ g +l +tg+rL++fA+ l+++fef + v + ++ l+ +++rv+++E+laV 676759086 257 ESRNIHIVDFGIFQGIQWASLLQALATRASGKPaRIRISGIPAPSLGesPGPSLIATGNRLRDFASLLDLNFEFYP-VLTPVHLLNRSSFRVESDEVLAV 355 *************************77666******99988999********************.799**************** PP GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304 n++l+l++llde++++ + + L+l +sl+P++v++ e e+++n+++F++r+ +al++ysa+f+sle++l res+er vEr+l+gr+i ++v + +++ 676759086 356 NFMLELYKLLDETATSVD---TALRLARSLNPRIVTLGEYEVSLNRGEFANRVKNALRFYSAVFESLESNLERESKERLRVERVLFGRRIADLVRTGNNN 452 ******99988887...*********************************************************************865442 PP GRAS 305 .......rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 r r+e++e+Wr+ +e+aGF+pv+ s++a++qa+lll +++ s y++ e++ ++ l W++ pL+++SaWr 676759086 453 nknkpgtRSGRMEEKEQWRMLMEKAGFQPVKPSNYAVSQANLLLWNYHySTLYSLVESEPGFIsLAWNNVPLLTISAWR 531 1112334889**********************************9999*9999999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.568	140	509	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.7E-103	173	531	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MAYMCTDNGN LMAIAQQLII QKQQQQQQQQ QHNPWPSQTL GYALTGSGFS DPFQLPGDPG 60 FHFPFLEHQN AAGSKEFMFS SDGEFDSDEW MESLINGGDV LQTSSIHGHD PFVEFPSRLS 120 APSSQPSDLN RVILSDQDDS AIPRSPPCNL DRPILKEPDF DLDRPVLKAI HDCAGISGIK 180 PDVAAETLVR IRESVSESGN PTERVGFYFA EALSNKLSPT SSLEDFILSY KTLNDACPYT 240 KFAHLTANQA ILEATYESRN IHIVDFGIFQ GIQWASLLQA LATRASGKPA RIRISGIPAP 300 SLGESPGPSL IATGNRLRDF ASLLDLNFEF YPVLTPVHLL NRSSFRVESD EVLAVNFMLE 360 LYKLLDETAT SVDTALRLAR SLNPRIVTLG EYEVSLNRGE FANRVKNALR FYSAVFESLE 420 SNLERESKER LRVERVLFGR RIADLVRTGN NNNKNKPGTR SGRMEEKEQW RMLMEKAGFQ 480 PVKPSNYAVS QANLLLWNYH YSTLYSLVES EPGFISLAWN NVPLLTISAW R

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MAYMCTDNGN LMAIAQQLII QKQQQQQQQQ QHNPWPSQTL GYALTGSGFS DPFQLPGDPG  60
FHFPFLEHQN AAGSKEFMFS SDGEFDSDEW MESLINGGDV LQTSSIHGHD PFVEFPSRLS  120
APSSQPSDLN RVILSDQDDS AIPRSPPCNL DRPILKEPDF DLDRPVLKAI HDCAGISGIK  180
PDVAAETLVR IRESVSESGN PTERVGFYFA EALSNKLSPT SSLEDFILSY KTLNDACPYT  240
KFAHLTANQA ILEATYESRN IHIVDFGIFQ GIQWASLLQA LATRASGKPA RIRISGIPAP  300
SLGESPGPSL IATGNRLRDF ASLLDLNFEF YPVLTPVHLL NRSSFRVESD EVLAVNFMLE  360
LYKLLDETAT SVDTALRLAR SLNPRIVTLG EYEVSLNRGE FANRVKNALR FYSAVFESLE  420
SNLERESKER LRVERVLFGR RIADLVRTGN NNNKNKPGTR SGRMEEKEQW RMLMEKAGFQ  480
PVKPSNYAVS QANLLLWNYH YSTLYSLVES EPGFISLAWN NVPLLTISAW R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-138	165	531	3	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250\|UniProtKB:A0A024B7I0, ECO:0000250\|UniProtKB:Q53K16, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676759086

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006404015.1	0.0	scarecrow-like protein 7
Swissprot	Q9SCR0	0.0	SCL7_ARATH; Scarecrow-like protein 7
TrEMBL	V4LZW2	0.0	V4LZW2_EUTSA; Uncharacterized protein
STRING	XP_006404015.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4786	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50650.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]