 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
676759228 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 339aa MW: 37664.7 Da PI: 9.7455 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676759228 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 404.3 | 1.6e-123 | 1 | 339 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla..... 92
mdd g+r+ r+k+ + ++++s+k q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+al+++ens+a
676759228 1 MDDGGHRDngRHKApQGQHQPSMK-----QVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMAtaaav 95
9*****998999995555558898.....****************************************************************9999*** PP
GAGA_bind 93 ...salpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakek.kkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
a+p+g+q+++g+k++++ +++++ pql+++a+e+re+e+++ lp++ a +a e+ +k+k+++r k+pk++++ +++k+++k+++kvkke++
676759228 96 anmAACPPGCQMSRGVKHMHQPHMHHQhqhhmPQLSENAYETREMETNDGLPTSPPAGSALESaAKPKRGKRVKDPKATTKAAPNKRGPKNQRKVKKENE 195
99999***************999855557889**********************9999887651688999*****************************9 PP
GAGA_bind 184 der........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
d+ sk+++k++++ +ln+v +De+t+P+PvCsCtGalrqCYkWGnGGWqS+CCttt+S+yPLP+ +++r+aRi+gr
676759228 196 DDLtkimfvkttldygeeetskhvligSKSDWKNQEMvGLNQVVYDETTMPPPVCSCTGALRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARIGGR 295
84358********************************88************************************************************* PP
GAGA_bind 259 KmSqgafkklLekLaaeGy.dlsnpvDLkdhWAkHGtnkfvtir 301
KmS++af+klL++LaaeG+ dlsnpvDLkdhWAkHGtn+++ti+
676759228 296 KMSGSAFNKLLSRLAAEGHqDLSNPVDLKDHWAKHGTNRYITIK 339
******************769**********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MDDGGHRDNG RHKAPQGQHQ PSMKQVMSII AERDAAIQER NLAISEKKAA VAERDMAFLQ 60
RDTAIAERNN AIMERDSALT ALQYRENSMA TAAAVANMAA CPPGCQMSRG VKHMHQPHMH 120
HQHQHHMPQL SENAYETREM ETNDGLPTSP PAGSALESAA KPKRGKRVKD PKATTKAAPN 180
KRGPKNQRKV KKENEDDLTK IMFVKTTLDY GEEETSKHVL IGSKSDWKNQ EMVGLNQVVY 240
DETTMPPPVC SCTGALRQCY KWGNGGWQSS CCTTTLSMYP LPALPNKRHA RIGGRKMSGS 300
AFNKLLSRLA AEGHQDLSNP VDLKDHWAKH GTNRYITIK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY088564 | 0.0 | AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence. |
| GenBank | AY380572 | 0.0 | AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds. |
