PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676760384

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NF-YC

Protein Properties

Length: 190aa MW: 21916.9 Da PI: 6.2233

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676760384	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.5	1.3e-55	43	147	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+f+leltlr+w+h+eenkrrtl+k+diaaa++rtd+fdflvdi+p 676760384 43 QLQVFWANQmqeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFVLELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 142 89****988889********************************************************************************** PP NF-YC 98 rdelk 102 rdelk 676760384 143 RDELK 147 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.65E-33	38	137	IPR009072	Histone-fold
Pfam	PF00808	8.0E-22	65	128	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.7E-38	66	143	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEHSEEAQPQ QGVMDYVPRG VPSSNMAHVA FQQAHQFHHH HHQLQVFWAN QMQEIEQTTD 60 FKNHTLPLAR IKKIMKADED VRMISAEAPV IFAKACEMFV LELTLRAWIH TEENKRRTLQ 120 KNDIAAAISR TDVFDFLVDI IPRDELKEEG LGVTKGTIPT AVGSPPYYYL QQQQGMMPWP 180 QGIPEQHHDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-57	51	143	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	121	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676760384

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC797142	1e-154	KC797142.1 Brassica napus transcription factor subunit NF-YC2 (NF-YC2) gene, complete cds; kinetoplast.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104135.1	1e-109	PREDICTED: nuclear transcription factor Y subunit C-2
Refseq	XP_018508660.1	1e-109	PREDICTED: nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	4e-93	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	M4CGK1	1e-108	M4CGK1_BRARP; Uncharacterized protein
STRING	Bra003334.1-P	1e-109	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM478	28	160

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	5e-87	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]