PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676760402
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 261aa    MW: 29262.4 Da    PI: 8.1664
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676760402genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.46.9e-3138137297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqkifelskkiW 96 
                lfqrl+se De++lLqG+idf+++ g +p++d+dafy f+ ++i f ++k+qlv+K+r++K+Kf + vkk     +  +ke++fsk+ +qk+fels+kiW
  676760402  38 LFQRLFSEADELALLQGIIDFNSTSG-DPFKDTDAFYGFAASRICFAATKTQLVNKVRKMKQKFLDTVKKsldkgKGGEKEIVFSKDFEQKAFELSRKIW 136
                79*******************99999.*****************************************9988775556789******************* PP

     DUF573  97 g 97 
                g
  676760402 137 G 137
                8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-2539137IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSGETEEVKK KRKRRKTKTT EEDVKIIPEA EASKQKSLFQ RLFSEADELA LLQGIIDFNS  60
TSGDPFKDTD AFYGFAASRI CFAATKTQLV NKVRKMKQKF LDTVKKSLDK GKGGEKEIVF  120
SKDFEQKAFE LSRKIWGIEG VLPSKPRSPK DEPDITEKNV ASSPLSSGEK IVALFKEFNL  180
LRFASDESSL LGRWSMVPGP LKRALEAKLK MQADKQVEVC LDRIDLLAYA ADVILRGDNA  240
SSGVEEEKDV SAEQLESNER D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914KKRKRR
2915KKRKRRK
31015KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676760402
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2524624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.14e-48DNA-binding storekeeper protein-related transcriptional regulator