PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676760434
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 199aa    MW: 22878.4 Da    PI: 10.5617
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676760434genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-1883132255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +ykGVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a+ +l+g
  676760434  83 RYKGVRMRK-WGKWVAEIREP---NKRSRIWLGSYKTAVAAARAYDTAAFYLRG 132
                59*****99.**********9...336*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1283132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3083141IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2183141IPR016177DNA-binding domain
SMARTSM003801.2E-3683146IPR001471AP2/ERF domain
PROSITE profilePS5103222.44583140IPR001471AP2/ERF domain
CDDcd000184.96E-1983142No hitNo description
PRINTSPR003671.8E-118495IPR001471AP2/ERF domain
PRINTSPR003671.8E-11122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MIIVGLSHSQ DSSEYRRTGG ASWMVLERIQ SSHVKDDVTL IVNFGLMEVK YKYKRKLDFP  60
MEKKGQVINE KRKWNHMSPK EMRYKGVRMR KWGKWVAEIR EPNKRSRIWL GSYKTAVAAA  120
RAYDTAAFYL RGPLARVNFP EQILRDRNAV AGVGEDMSAT FIRQKAAEVG ARVDAELWSE  180
SSISVDKPDM NKLPEPGRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1580143266ATERF1
3gcc_A2e-1580143266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00430DAPTransfer from AT4G06746Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676760434
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438722.16e-74PREDICTED: ethylene-responsive transcription factor RAP2-9
SwissprotQ8W3M36e-64RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLV4N1765e-68V4N176_EUTSA; Uncharacterized protein
STRINGXP_010438722.12e-73(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.11e-56related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]