PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676761034

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WOX

Protein Properties

Length: 256aa MW: 29186.7 Da PI: 9.8138

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676761034	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.9e-21	91	150	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ 676761034 91 TRWNPTQEQIGILEMLYKGgMRTPNAQQIEHITSQLgkygKIEGKNVFYWFQNHKARERQ 150 7***************99************************************97 PP
2	Wus_type_Homeobox	116.7	1.1e-37	91	152	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+lyk G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq 676761034 91 TRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITSQLGKYGKIEGKNVFYWFQNHKARERQKQ 152 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.025	86	151	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.27E-12	88	156	IPR009057	Homeodomain-like
SMART	SM00389	2.0E-7	88	155	IPR001356	Homeobox domain
CDD	cd00086	7.47E-5	91	152	No hit	No description
Pfam	PF00046	1.0E-18	91	150	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.5E-8	92	150	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MKVHEFSNGY SSWEQHDSPS SLSLSCKRLR PLAPKLSGSP SSPPSSSSGI TSATFDLKSF 60 IKPDQTGPRK FEYSLEHKRD LPQVETHPGG TRWNPTQEQI GILEMLYKGG MRTPNAQQIE 120 HITSQLGKYG KIEGKNVFYW FQNHKARERQ KQKRNYLISL SCQSSFKTTS VSNTSVTTKT 180 RTSSSADVRR ESMVEKEELL EENEYKRTCR SWGFENLEIE SRRNINSSTN ATMATTFNKI 240 IDNVTLELFP LHPEGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676761034

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013700837.1	1e-157	WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	1e-141	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A1J3CU43	1e-159	A0A1J3CU43_NOCCA; WUSCHEL-related homeobox 4
STRING	Bra014055.1-P	1e-153	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-129	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]