PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676762504

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

FAR1

Protein Properties

Length: 191aa MW: 22392.8 Da PI: 9.9534

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676762504	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.9	2.5e-26	18	105	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY++Y++++GF +r+ + ++s+++g+i r+f C+keg+ + + k + r++r++tr gCka+++vk ++++kw++tk+++eHnH+l 676762504 18 FYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSIRGKFGSVRKPRPSTREGCKAMIHVKYDRSAKWVITKFVKEHNHPL 105 9************************************999999989*************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-24	18	106	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MEPREGIEFE SEDAAKMFYD DYSRRLGFVM RVMSCRRSEK DGRILARRFG CNKEGHCVSI 60 RGKFGSVRKP RPSTREGCKA MIHVKYDRSA KWVITKFVKE HNHPLLVAPR EPRQTLDDKD 120 KRIQELTIEL RNKKRLCAAY KEQLDAFAKI VEEHSNRISK KVESVVENLK EFEPLELELF 180 QSKHNALPSQ L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676762504

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002891	1e-166	BT002891.1 Arabidopsis thaliana clone RAFL14-97-G02 (R20421) unknown protein (At2g43280) mRNA, complete cds.
GenBank	BT004409	1e-166	BT004409.1 Arabidopsis thaliana clone U20421 unknown protein (At2g43280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397492.1	1e-125	protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4KM15	1e-124	V4KM15_EUTSA; Uncharacterized protein
STRING	XP_006397492.1	1e-125	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-117	FAR1 family protein