PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676762748
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 619aa    MW: 69333.3 Da    PI: 9.8068
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676762748genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65e-124598147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47
                     r++W t+E++ll++avk++G g+W+++a ++          ++++ ck +++++
        676762748 45 RQAWGTWEELLLACAVKRHGFGDWDSVATEVRsrtsfssVFLSANYCKQKYRDL 98
                     89******************************8888888888888898888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-63980IPR009057Homeodomain-like
PROSITE profilePS512949.33840103IPR017930Myb domain
SuperFamilySSF466893.76E-74199IPR009057Homeodomain-like
SMARTSM007172.5E-744101IPR001005SANT/Myb domain
PfamPF002493.9E-114599IPR001005SANT/Myb domain
CDDcd001673.94E-64799No hitNo description
SMARTSM002976.3E-24272382IPR001487Bromodomain
SuperFamilySSF473701.57E-18278381IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.7E-17279407IPR001487Bromodomain
CDDcd043691.80E-16283377No hitNo description
PfamPF004391.9E-12285366IPR001487Bromodomain
PROSITE profilePS5001413.189291363IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MRKEGGGSYD MKEDSNNNEY ISSDDYNNNI GEEEEDENKK SKKKRQAWGT WEELLLACAV  60
KRHGFGDWDS VATEVRSRTS FSSVFLSANY CKQKYRDLKR RFSDVDNDAT TTTTTKKEEE  120
GGGNNIPWLE QLRSLRVAEL RREVQQYDVS ILSLQLKVKK LEEERGGGGG GEEKPDLEED  180
EKTKGDGGEG REKDVESDRS MNESNSTETR DDDDHLPDPD PVNTAEEGSE ASHSGELGES  240
GTTSGKKWKT KRRKHSVDSK DHHDDDVDGD GEIRSAVSES QPLIRLLDLI RSHPRGSLFE  300
RRLRSQETED YKSLVKQHLD IETIQRKLKQ GSYDDSSRLT FYRDVQLLFT NAITFFPSSS  360
SESMAAHELR TIVYEEMRKE TGKSSPRLIK QLEASGSIKA DAAETSESSL LSRQQKSSAP  420
LVVCKRRRLV SAKASPSSSS FSQKEETKEE TVSEEKENVV TGGRVSKRAA NNTKTGKGKN  480
KQKQTEEKTN SPNENTKNSS KQETGKTEKK TVPSDKKKSV ADFLKRLTKN SPQKEGKSQN  540
GKKESKSRPR ELRSNSVGKR KKAEVENTTP VKRAPGRPSS QKKTVEAVAT ATASVSGKRG  600
RESGSTGKDN KQPKKRSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424428KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676762748
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181971.10.0DNA-binding bromodomain-containing protein
TrEMBLA0A1J3E9D60.0A0A1J3E9D6_NOCCA; Uncharacterized protein
TrEMBLO648770.0O64877_ARATH; At2g44430
STRINGAT2G44430.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-124DNA-binding bromodomain-containing protein