PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676762966
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 303aa    MW: 33602.4 Da    PI: 4.6873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676762966genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-20101150255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ +l+g
  676762966 101 KYRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAAIVYDNAAIQLRG 150
                8********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-30100158IPR001471AP2/ERF domain
PfamPF008476.1E-13101150IPR001471AP2/ERF domain
SMARTSM003807.4E-39101164IPR001471AP2/ERF domain
CDDcd000181.96E-32101157No hitNo description
SuperFamilySSF541716.54E-22101158IPR016177DNA-binding domain
PROSITE profilePS5103223.868101158IPR001471AP2/ERF domain
PRINTSPR003671.5E-10102113IPR001471AP2/ERF domain
PRINTSPR003671.5E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
METDKRVIIK LTEHSIKNTT TTTTRTQPRI LRISVTDPYA TDSSSDEEEE DFAEISRKRR  60
RVKKYVNEVV LEPTCSDKET PKKKKKRPNK TAVETAAPAR KYRGVRQRPW GKWAAEIRDP  120
SRRVRLWLGT YDTAEEAAIV YDNAAIQLRG PNALTNFSPP QEEASKEMEE TSELTTSGGG  180
GCCLGSPVSV LESPFFSSVS TEVVAVKEEI STATVEVKEE ISTAKITVSD TFKEFSAPFS  240
SDDDVFGFPT SFPDFYEGGL FGNDLFADMS FGFGSGSGFS SWHVEDHFQD IGDLFGSDPL  300
LAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2197157162ATERF1
3gcc_A7e-2197157162ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15660RKRRR
25663RKRRRVKK
35761KRRRV
48087PKKKKKRP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676762966
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0498761e-33AL049876.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project).
GenBankAL1615311e-33AL161531.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31.
GenBankAY5608491e-33AY560849.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g11140) mRNA, complete cds.
GenBankBT0251761e-33BT025176.1 Arabidopsis thaliana At4g11140 mRNA, complete cds.
GenBankCP0026871e-33CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF2P31e-33AF080120.1 Arabidopsis thaliana BAC F2P3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626211.11e-127PREDICTED: ethylene-responsive transcription factor CRF1
SwissprotO825031e-100CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A3P6AUH41e-128A0A3P6AUH4_BRAOL; Uncharacterized protein
STRINGBo3g045150.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.15e-83cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]