PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676763016
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family SBP
Protein Properties Length: 554aa    MW: 62638.8 Da    PI: 10.1978
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676763016genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.54.3e-39408485178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +Cq+egC+adls+ k+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk ++
  676763016 408 RCQAEGCNADLSHSKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQ 485
                6*************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-34403470IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.026406483IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-36407486IPR004333Transcription factor, SBP-box
PfamPF031101.5E-29409482IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MLSVNGSAHR MIEISQKEKR KEKQKRKGRI IDSPYDWVNV DGSLLAPKGT HSSPPFLDSL  60
LSHSRASRYS LPLRRHVSSQ NVNRRIATVS WARERERRII GGWSASKISS TYLVVFVKAK  120
DQLEALPNKQ QYVEIQIRVQ LENTTVKVHM IDVWYIKINK MAQTLTLGHG RETQYFSLYL  180
SIFLIKRDIL AERKDSNSNR VAHKRKERSS SGSPQYYSWN MLDYEWDNPS VIMLSGEDRS  240
HHHQQEPDPA RVLSIFDPTG HTHHHQSSYN SISPPLFSSF SNQQHLTVYG HQTTTNSNQF  300
HNSFYDPRTT TNPYGASSDS IYHPHHSSAS ALFSFDQTGP GSGSSYNFLI PKTEVDVSRP  360
LDFTSNRIGL NLGGRTYFSA ADDDFVSRLY RRSRPGELGM GSSLSTPRCQ AEGCNADLSH  420
SKHYHRRHKV CEFHSKASTV VAAGLSQRFC QQCSRFHLLS EFDNGKRSCR KRLADHNRRR  480
RKCHQSASKP TPDITTTPQS PNDSGIKSSS SPSDALLSPP TISLECFRQR QFQTTASSST  540
SASSSSNSMF FSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-294094821184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676763016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439145.10.0PREDICTED: squamosa promoter-binding-like protein 8
SwissprotQ8GXL31e-138SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A397XKV01e-174A0A397XKV0_BRACM; Uncharacterized protein
TrEMBLM4EWN71e-174M4EWN7_BRARP; Uncharacterized protein
STRINGBra033221.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70102743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-132squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]