PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676763024
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 257aa    MW: 28783.5 Da    PI: 6.2572
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676763024genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001783105123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k+F ++  L  H  +H
  676763024  83 FQCKACKKVFASHQALGGHRASH 105
                89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-982107IPR007087Zinc finger, C2H2
SuperFamilySSF576677.46E-582105No hitNo description
SMARTSM003550.09883105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01483110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.601.101.5E-4116151No hitNo description
SuperFamilySSF576677.46E-5153180No hitNo description
PfamPF139129.3E-13157181IPR007087Zinc finger, C2H2
SMARTSM003550.51158180IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307158180IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MNSSCIDFVM FSSRGQHDED NMSRRPWKRE RSNHLNLSPN EDEELANCLV LLSNSGDAYS  60
GHHNKHGNGK GKSVKKQKTA QVFQCKACKK VFASHQALGG HRASHKKVKG CFASQDKEEE  120
EEEYKEDDDE DEEDDDEEEE EDKSTAAHMI ARKRSNAHEC TICHRVFSSG QALGGHKRCH  180
WLTPSNYLRM TPLHDSSTQH HSAARSQLLD QPSLDLNLAC QEYSVDPTVM SVGMLGTDGG  240
ANNHSNSWLK LASGDWS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676763024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934221e-169AB493422.1 Arabidopsis thaliana At1g02040 mRNA for hypothetical protein, partial cds, clone: RAAt1g02040.
GenBankBT0300401e-169BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds.
GenBankCP0026841e-169CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899591e-169U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889340.21e-135uncharacterized protein LOC9325404
TrEMBLD7KP491e-133D7KP49_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10000181e-134(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-25C2H2-like zinc finger protein