PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676763560
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 768aa    MW: 84876 Da    PI: 5.11
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676763560genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.2e-1075101127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC++f+r G C++G +Ck+aHg+
  676763560  75 FKTSLCSYFRRQGSCSHGTTCKYAHGE 101
                69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.8E-1469106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-873106IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-674101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.10374102IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-875101IPR000571Zinc finger, CCCH-type
CDDcd005901.01E-4165230No hitNo description
SuperFamilySSF549282.17E-5168234IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.6E-5168230IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168733.476256768IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.14E-24259284IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.14E-24316453IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.14E-24491576IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.1E-43504576IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.1E-43611707IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059586.4E-7663703IPR010280(Uracil-5)-methyltransferase family
Gene3DG3DSA:3.40.50.1503.1E-43743768IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MSSSASIDEF PSAAETLTTQ NPSDTTDDVP MSSSSIDPTP SPDEVEAVGE KRKREDDEKT  60
NLESSDPNPT PSPWFKTSLC SYFRRQGSCS HGTTCKYAHG EKELRQKPDN TWDPTSERGK  120
KAKISENAAK LAEEEEEGEV MFTEEMMDDG EGGGESVHDV SLSKCLVHLP TKWQSDDLKK  180
FLGEQGVEFK FAKKRRGMMV GFLTFENAEQ LQSGVEILEG KNVNNKSLKI ADVLPRTTDK  240
NGAKNPAAKL KSAREAVTPL ADLSYADQLE QKKASIMQML KKLTRNARKA CPNGKSLPEW  300
VLQSREIGGL SCKLEGIIES PLTNGYRNKC EFSTGYSVEG KLTVGFMLGN FSAGVTAVEV  360
AVNCPNISKI ACRYASIFQS FLEKSKLPVW NRFKSCGFWR QLTVREGSKP GVFSNDEDTR  420
IAEVMLMVQV CTTDTDEAEV ANEFEEMAKA FAEGARAISP PLPLTVLVVQ DHVGISNVAP  480
PDCPLRLLPI PMSDNGTNQD QSTNVLSEAR IHDHINNLRF SISPTAFFQV NTGAAEKLYS  540
LAGDWADLGP DTLLFDVCCG TGTIGLTLAH RVGMVILCYF NLQILTVFAD LVERKLWKWA  600
EDVMSSLLTE YLDVSEVEEA KPLSDANDDL DKQICSTEEN SNSEQKDSSN EPERSTNPQF  660
KNVVAIVDPP RPGLHPDVIK ALRTHPRYIS CNPETLVANA IELCTPSFEK TGQENKGYQR  720
QRKMGTAALA RHRAKKMPAS EPFKPVKAMA VDLFPHTDHC EMVMLLKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676763560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438391.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
RefseqXP_018441830.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A3P6BS610.0A0A3P6BS61_BRACM; Uncharacterized protein
STRINGBra011947.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120031516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]