PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676764382
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family SBP
Protein Properties Length: 385aa    MW: 43532.5 Da    PI: 8.334
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676764382genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.91.3e-42108183277
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                Cqv gC++dls+ k+yh+rh+vCe+hsk++vv+vsg+eqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++
  676764382 108 CQVYGCNMDLSSSKDYHKRHRVCETHSKTSVVIVSGIEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPS 183
                **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.4E-34102169IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.864105182IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.85E-40106185IPR004333Transcription factor, SBP-box
PfamPF031109.2E-33108181IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAGFEQGLSN ELDKDDHVFM SGMAGKSSAV SISKVASSTC VVPSSLLHVE EEEGEENQSS  60
SSKLSRIDFK LRSFMDYGNH DGTSARDFSL PAKKTRASSN PCSQNPLCQV YGCNMDLSSS  120
KDYHKRHRVC ETHSKTSVVI VSGIEQRFCQ QCSRFHFLSE FDDGKRSCRR RLAGHNERRR  180
KPSFYFLPGK RHKLLRTSQG NKFLEDSSVN DFSLVLPESF PGSFLYRVMD EHDHHRASRL  240
VSFKEEPMFP GQNRVYESKP LVYSPEASGV SSIWDLHESA PRPTCALSLL SAQSQQHFSE  300
TPNKTFSITQ PNQILNHSTI DYHQMQPLRT GPVKTKPGSS SRNGKGSSTV DLLQLSSHLQ  360
RIEQQQRNFT DEVKQEYNEL YFPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-311071811084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676764382
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391054.10.0squamosa promoter-binding-like protein 6
RefseqXP_024007394.10.0squamosa promoter-binding-like protein 6
RefseqXP_024007399.10.0squamosa promoter-binding-like protein 6
SwissprotQ94JW81e-175SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBLV4JSQ40.0V4JSQ4_EUTSA; Uncharacterized protein
STRINGXP_006391054.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-170SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]