PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676764434
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 617aa    MW: 69931.8 Da    PI: 5.7511
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676764434genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.65.2e-1212346081374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                l++lL++cA+av+s d+++a + L++++ ++s++gd +qRla+yf+eAL+ar+++  ++ ++ a+p+s+ts   +++ l+a+klf++v+Pi+   + +aN
  676764434 234 LRNLLTQCAQAVASFDQRRAAEKLKEIRSNSSSSGDGIQRLAFYFAEALEARITGiISPPVSTAFPSSTTS---MVDILKAYKLFVHVCPIYVADYYAAN 330
                689****************************************************7788888888888888...9************************* PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                + I+e + +++++HiiDf++ +G+QWp+Ll+aL++Rp+gpp+lR+Tg++ p+sg   ++++eetg+rL++f++ ++vpfefn+ +ak++e+++l+e+ ++
  676764434 331 KSIYELALKATKLHIIDFGVLYGFQWPCLLRALSERPGGPPMLRVTGIELPQSGfrPSDRVEETGRRLKRFCDMFNVPFEFNF-IAKKWESITLDEITIN 429
                *****************************************************9*****************************.7*************** PP

       GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreiv 295
                p+E+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+lfd++++++ +e+  ++r+ +Erell r+++
  676764434 430 PDETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHFSSLFDMFDTTIQAEDeyKNRALLERELLVRDAM 529
                *****************************************************************************99998899*************** PP

       GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +v++ egaer++r et+++Wr r+ +aGFkp+++s++++k ak ++rk + + + ++++s+++++gWk+r ++++S+W+
  676764434 530 SVISSEGAERFARPETYKQWRVRILRAGFKPAAISKEIMKGAKEIVRKRYHKDFLIDSDSHWMLQGWKGRVIYAFSCWK 608
                **************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.211208588IPR005202Transcription factor GRAS
PfamPF035141.8E-118234608IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MDALLQVSVD GFRFENGSGS GSCCKPRNNL DSDNNLFPNF NEPDKTQDQS SPADSPPTIC  60
FDNSPVLKYI NDMLMDEQDF VEEPRFLQDN LALQAAERSF YEILQQQPSQ HSDQNSSSSG  120
DQDCTFPGNL STVTTLTDSG SLLSNGESQR RYRHRNDEED DVENGRRNKQ PAIFVSEMEE  180
LAAKLEHVLL VCKTNHEEDA STAVTKQSSP NRGAGRAKGS SNRSKAVKSD AVDLRNLLTQ  240
CAQAVASFDQ RRAAEKLKEI RSNSSSSGDG IQRLAFYFAE ALEARITGII SPPVSTAFPS  300
STTSMVDILK AYKLFVHVCP IYVADYYAAN KSIYELALKA TKLHIIDFGV LYGFQWPCLL  360
RALSERPGGP PMLRVTGIEL PQSGFRPSDR VEETGRRLKR FCDMFNVPFE FNFIAKKWES  420
ITLDEITINP DETTVVNCIH RLQYTPDETV SLDSPRDTVL KLFRDINPDL FVFAEINGMY  480
NSPFFMTRFR EALFHFSSLF DMFDTTIQAE DEYKNRALLE RELLVRDAMS VISSEGAERF  540
ARPETYKQWR VRILRAGFKP AAISKEIMKG AKEIVRKRYH KDFLIDSDSH WMLQGWKGRV  600
IYAFSCWKPA QKLTDKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-442346085375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676764434
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400957.10.0scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLV4KWN00.0V4KWN0_EUTSA; Uncharacterized protein
STRINGXP_006400957.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]