PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676764946
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 389aa    MW: 44374.6 Da    PI: 5.3602
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676764946genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM981.4e-30219850128
        NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                ++k++++ewyf+s  dkky +g r nrat++gyWkatgkd+e+ + + +l g+kktLvf++grap+g +t+Wvmheyrl
  676764946  21 RLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGKDREIRR-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 98 
                4567899*************************************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.7371122IPR003441NAC domain
SuperFamilySSF1019411.31E-3620123IPR003441NAC domain
PfamPF023656.5E-142198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MKYAVPCLVF ESSVIMSVYS RLKTRDQEWY FYSALDKKYG NGARMNRATN KGYWKATGKD  60
REIRRDIQLL GMKKTLVFHS GRAPDGLRTN WVMHEYRLVD YEIENNGNLV QDAYVLCRVF  120
HKNNIGPPSG NRYAPFMEEE WADDGVALIP GVDVRVRAEP LVAANVNNQM DQEIKSASKE  180
FININEPPRE TTPMDIELIH QNHHENAPKP QENNSNGHYD EDEEALKREH ADEDERPPPL  240
CILNKEAPLP LLQYKRRRQN ESNNNSSRTT QDHCSSTTTV DNTTTLVSTT ATATNTAISA  300
LLEFSLMGIS DRKENPQPLQ KEASPPTPLP SPEEKLNDLQ KELHQMSVER ETFKLEMMSA  360
EAMISILQSR IDALRQENDE LKQSSANGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-292612473170NAC domain-containing protein 19
3swm_B2e-292612473170NAC domain-containing protein 19
3swm_C2e-292612473170NAC domain-containing protein 19
3swm_D2e-292612473170NAC domain-containing protein 19
3swp_A2e-292612473170NAC domain-containing protein 19
3swp_B2e-292612473170NAC domain-containing protein 19
3swp_C2e-292612473170NAC domain-containing protein 19
3swp_D2e-292612473170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676764946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750304.10.0NAC domain-containing protein 71-like isoform X1
RefseqXP_013750305.10.0NAC domain-containing protein 71-like isoform X2
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A397ZF440.0A0A397ZF44_BRACM; Uncharacterized protein
STRINGBra029844.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.10.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]