PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676764978
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 162aa    MW: 19157.4 Da    PI: 7.8458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676764978genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-1793136347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++ ++++ k++G+g+Wk+I+r +   Rt+ q+ s+ qky
        676764978  93 PWTEEEHKCFLEGLKRYGKGDWKKISRFVR-SRTPTQVASHAQKY 136
                      7*****************************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172255IPR001005SANT/Myb domain
SuperFamilySSF466892.9E-5559IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-1285137IPR009057Homeodomain-like
PROSITE profilePS5129419.26386141IPR017930Myb domain
SuperFamilySSF466895.1E-1988141IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-1889140IPR006447Myb domain, plants
SMARTSM007171.9E-1290139IPR001005SANT/Myb domain
PfamPF002498.7E-1593136IPR001005SANT/Myb domain
CDDcd001673.62E-1293137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MTPKHWTRTD DKRFEEALVR FPEEDFPDYR FEKIATYLEM TLEDVMHYYE ALVHDIDLIE  60
SGRYGIIDYS ESSGGISSHT TKHNEKDRKR GIPWTEEEHK CFLEGLKRYG KGDWKKISRF  120
VRSRTPTQVA SHAQKYFLRQ NVDSKAKKRS SIHDITSVDH AT
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676764978
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015273.12e-66transcription factor DIVARICATA
SwissprotQ8S9H72e-43DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4NQW24e-65V4NQW2_EUTSA; Uncharacterized protein
STRINGXP_006407533.17e-66(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-55MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]