PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676764988
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 195aa    MW: 22810.7 Da    PI: 5.8419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676764988genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-0977119347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       W +eE+e ++ + k++G++ W++Ia  m   + + q+ ++ ++y
        676764988  77 IWNKEEHEWFLIGLKRFGKD-WEKIAVLMD-SKNPMQVALYAHNY 119
                      5*****************99.*********.**********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.513152IPR017884SANT domain
SMARTSM007170.0061253IPR001005SANT/Myb domain
SuperFamilySSF466893.29E-9457IPR009057Homeodomain-like
CDDcd001670.00115551No hitNo description
PROSITE profilePS5129410.76870124IPR017930Myb domain
SuperFamilySSF466894.64E-1073124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-673122IPR009057Homeodomain-like
SMARTSM007172.8E-774122IPR001005SANT/Myb domain
CDDcd001673.10E-678120No hitNo description
PfamPF002492.6E-678119IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAANSWTREE NEQFKNALQL FSAFLPNRFE KIAEYLQKSV VGVIEHYQEL VDDLLEIRSE  60
ELIHAVAPSM YPVERTIWNK EEHEWFLIGL KRFGKDWEKI AVLMDSKNPM QVALYAHNYF  120
QWENAKNVMK RGGSKDITMW DINVDSTGQQ ESHVLSQSQP QQGTIAQEIG QHARTSDPNH  180
IFHDRTYTRE CKISL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676764988
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730892.12e-68transcription factor DIVARICATA-like
TrEMBLD7L9134e-65D7L913_ARALL; Predicted protein
STRINGAl_scaffold_0003_10716e-66(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15934911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-27MYB family protein