PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676765018
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 312aa    MW: 33896.7 Da    PI: 7.1336
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676765018genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.8e-3099152155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  676765018  99 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 152
                59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05996155IPR017930Myb domain
SuperFamilySSF466893.05E-2096156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-3098157IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24100152IPR006447Myb domain, plants
PfamPF002491.2E-7102151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MREEDSEWFS RWEEGLPSPE ELMPLSQSLI SPDLALAFDI RSPNGNGNSG QQPHHHHQST  60
PPTQQLPSSQ ANSSAEFAAD SADLGSGAAG DEPARTLKRP RLVWTPQLHK RFVDAVAHLG  120
IKNAVPKTIM QLMSVDGLTR ENVASHLQKY RLYLKRMQGL SSGSGAASDP ATDRLFASSP  180
VPAHFLHPNR VPSSDHFMPS FVPIATLQQQ QQMAAAAAAA AANPHLQPPQ FHHRQISAAH  240
FGPPTNNGQF GSPTNNGKFD PSFLARQTQT QPLHRMSTPS LHSPVGNYVE DLESANANGG  300
RTVLTLFPTR DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-3299155157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676765018
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0117083e-46AC011708.8 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence, complete sequence.
GenBankCP0026863e-46CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298091.11e-177transcription factor MYBC1
SwissprotO222101e-70MYBC1_ARATH; Transcription factor MYBC1
TrEMBLR0HMQ61e-176R0HMQ6_9BRAS; Uncharacterized protein
STRINGXP_006298091.11e-177(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-140G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]