PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676765188
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 539aa    MW: 58947.7 Da    PI: 6.8607
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676765188genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.21.2e-19157243186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +L++a++++ ++l+rg+l++ +We+v++ +  r +++ +s +qCk+k++nl+kryk ++++++++  +s +++p+f+++e
  676765188 157 EWSDAAITCLLDAYSDKFTQLNRGNLRGRDWEDVASTVseRCEKLVKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSATHWPWFKKME 243
                5*************************************8788899***************************9.556668*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-21155245No hitNo description
Gene3DG3DSA:3.40.1160.102.7E-65290531IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.06E-52298531IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.27E-117300532No hitNo description
PfamPF006964.2E-23301511IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPNQ QQHHHHQVLH HAPYAPRRFT PKLSNQIHVA HHQRNGGEED  60
DENDVVVEAS SAFHGVNPFS TDENSNPYDN NAAVDGDDDL EANRSRIGGV RLEKRQSQDE  120
LSDGGTTNGG EITPYGSFKR PRTSSSSAGE QRKDREEWSD AAITCLLDAY SDKFTQLNRG  180
NLRGRDWEDV ASTVSERCEK LVKSVEQCKN KIDNLKKRYK LERHRMSSGG TSATHWPWFK  240
KMEEIVGNSL TTKAASDDDR SGSSLGNAAK PARRYPLVTY NPGVQINNVK SKATSNPRWR  300
RVVLKISGAA LACTGPNNID PKVVNLIARE VAMACRLGVE VAIVVGSRNF FCGGTWITAT  360
GLDRTTAYHI SMMASVMNSV LLQSSLEKMG VQARLQTAIV VQGVGEPYNR QRATRHLDKG  420
RVVIFGGIGA TLGNPLLSSD ASAALRAIDI NAEAMVKGTN VDGVYDCHSQ DSNVTFEHIT  480
FHDLASRGLT TMDTMALNFC EENSIPVVVF NFLEAGNITK ALCGEQVGTL IDRTGRGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A9e-582915311239Uridylate kinase
3ek5_B9e-582915311239Uridylate kinase
3ek5_C9e-582915311239Uridylate kinase
3ek5_D9e-582915311239Uridylate kinase
3ek5_E9e-582915311239Uridylate kinase
3ek5_F9e-582915311239Uridylate kinase
3ek6_A9e-582915311239Uridylate kinase
3ek6_B9e-582915311239Uridylate kinase
3ek6_C9e-582915311239Uridylate kinase
3ek6_D9e-582915311239Uridylate kinase
3ek6_E9e-582915311239Uridylate kinase
3ek6_F9e-582915311239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676765188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407613.10.0uncharacterized protein LOC18023904 isoform X2
TrEMBLV4NR260.0V4NR26_EUTSA; Uncharacterized protein
STRINGXP_006407614.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein